From: Automatic extraction of reliable regions from multiple sequence alignments
Method | Description/Options |
---|---|
Poa [17,18] | local unprogressive mode using blosum80.mat |
ClustalW version 1.83 [19] | default parameters |
Muscle version 3.52 [15] | one iteration: -stable -maxiters 1 |
“ | two iterations: -stable -maxiters 2 |
“ | default: -stable |
Probcons version 1.09 [2] | default parameters |
Dialign version 2.2 [20,21] | default parameters |
Mafft version 5.63 [3,22] | -localpair |
“ | -localpair -maxiterate 100 |
“ | -globalpair |
“ | -globalpair -maxiterate 100 |
Kalign [4] | default parameters |