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Table 5 Number of tryptic peptides predicted to be observable for selected proteins from the two data sets.

From: Prediction of peptides observable by mass spectrometry applied at the experimental set level

Protein GI Number Num tryptic peptides (>= 6 aa) Num tryptic peptides observed Percent amino acid coverage Number predicted detectable Percent predicted detectable Percent amino acid coverage of detectable
Avian bursa data set
5902793 20 2 10 9 45 33
119359 50 5 9 15 30 21
128413 16 2 11 3 18 14
2119012 7 2 28 3 43 17
17025728 16 2 6 7 44 20
122000 6 4 33 0 0 0
1762374 7 1 23 2 29 21
1172808 13 1 6 4 30 19
7512219 44 1 2 11 25 34
104697 9 2 22 4 44 30
118106991 12 0 0 0 0 0
Hodgkin's lymphoma model data set
479367 34 1 3 5 15 11
729629 18 2 14 11 61 43
899264 13 1 10 4 31 21
63544 48 2 2 6 13 15
50750413 38 3 11 8 21 25
45433516 26 0 0 0 0 0
46048702 14 0 0 0 0 0
125745137 9 0 0 0 0 0
125745114 9 0 0 0 0 0
45433516 26 0 0 0 0 0
  1. 1) For the avian bursa dataset, 10 randomly selected observed proteins and the DR3 protein that was expected but not observed. 2) For the Hodgkin's lymphoma model dataset, 5 proteins that were observed in the pathway under consideration and 5 that had been observed using other methods in previous experiments but not observed in this dataset.