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Table 2 Topology predictions for the Msa protein

From: Structure and function predictions of the Msa protein in Staphylococcus aureus

  TopPred TMpred PHDhtm TMHMM SPLIT HMMTOP MEMSAT DAS TSEG
N-terminal IN IN OUT IN IN IN IN - -
# of TMS 3 3 3 4 4 4 4 4 4
TMS 1* 3–23 - 14–34 3–21 2–23 6–23 7–23 8–21 3–22
TMS 2 27–47 29–47 - 25–47 27–47 28–47 30–47 27–44 24–47
TMS 3 - 55–75 55–72 54–76 54–69 60–77 54–70 57–67** 54–75
TMS 4 106–126 107–123 108–125 108–125 107–126 108–125 108–125 110–124 105–128
  1. TMS, transmembrane segments
  2. * Analysis with several signal peptide prediction tools indicate that this TMS is a putative signal peptide
  3. ** Probability not significant