Table 2 Topology predictions for the Msa protein
From: Structure and function predictions of the Msa protein in Staphylococcus aureus
| Â | TopPred | TMpred | PHDhtm | TMHMM | SPLIT | HMMTOP | MEMSAT | DAS | TSEG |
|---|---|---|---|---|---|---|---|---|---|
N-terminal | IN | IN | OUT | IN | IN | IN | IN | - | - |
# of TMS | 3 | 3 | 3 | 4 | 4 | 4 | 4 | 4 | 4 |
TMS 1* | 3–23 | - | 14–34 | 3–21 | 2–23 | 6–23 | 7–23 | 8–21 | 3–22 |
TMS 2 | 27–47 | 29–47 | - | 25–47 | 27–47 | 28–47 | 30–47 | 27–44 | 24–47 |
TMS 3 | - | 55–75 | 55–72 | 54–76 | 54–69 | 60–77 | 54–70 | 57–67** | 54–75 |
TMS 4 | 106–126 | 107–123 | 108–125 | 108–125 | 107–126 | 108–125 | 108–125 | 110–124 | 105–128 |