Table 11 Results: Hierarchy Specific SVM Score Thresholding (atc weights) with Relaxed Correctness Criteria (Decision Perspective). This shows that we get 5 to 9% improvements when we use ancestors up to three levels from the code being analyzed. These improvements are obtained using a decision perspective for evaluation.
From: GO for gene documents
Hierarchy | ANC_LEVEL | Recall | Precision | FScore |
|---|---|---|---|---|
MF | baseline | 0.6639 | 0.3076 | 0.4100 |
MF | 1 | 0.6639 | 0.3195 | 0.4309 |
MF | 2 | 0.6652 | 0.326 | 0.4370 |
MF | 3 | 0.6652 | 0.3288 | 0.4396 |
MF | 4 | 0.6652 | 0.3296 | 0.4403 |
MF | 5 | 0.6652 | 0.3297 | 0.4404 |
CC | baseline | 0.7442 | 0.3163 | 0.4432 |
CC | 1 | 0.7442 | 0.3321 | 0.4586 |
CC | 2 | 0.7458 | 0.3512 | 0.4769 |
CC | 3 | 0.74583 | 0.3551 | 0.4804 |
CC | 4 | 0.7458 | 0.357 | 0.4822 |
CC | 5 | 0.7458 | 0.3572 | 0.4823 |
BP | baseline | 0.5578 | 0.2286 | 0.3236 |
BP | 1 | 0.5583 | 0.2360 | 0.3311 |
BP | 2 | 0.5583 | 0.2432 | 0.3381 |
BP | 3 | 0.5586 | 0.2466 | 0.3415 |
BP | 4 | 0.5586 | 0.2482 | 0.3430 |
BP | 5 | 0.5586 | 0.2485 | 0.3433 |