Skip to main content

Table 2 Results: Hierarchy Specific SVM Score Thresholding (atc weights). The table presents results when a single SVM score threshold is selected for each hierarchy. These results show high improvements when compared with results obtained without thresholds (compare with Table 1).

From: GO for gene documents

   

Training

Testing

Hierarchy

Split

Threshold

Recall

Precision

Fscore

Recall

Precision

Fscore

MF

1

-0.84

0.5624

0.4136

0.4504

0.5992

0.4258

0.4684

MF

2

-0.86

0.5923

0.3835

0.4390

0.6775

0.4073

0.4769

MF

3

-0.86

0.5954

0.3734

0.4328

0.6817

0.3874

0.4684

MF

4

-0.84

0.5713

0.4046

0.449

0.6857

0.4487

0.5134

MF

5

-0.85

0.5921

0.4076

0.4541

0.6772

0.3945

0.4727

MF

Average

na

0.5827

0.3965

0.4451

0.6643

0.4128

0.48

CC

1

-0.82

0.4799

0.3185

0.3627

0.5301

0.3531

0.3986

CC

2

-0.82

0.4823

0.3214

0.3665

0.5359

0.3516

0.4006

CC

3

-0.86

0.5287

0.2976

0.3590

0.6553

0.3895

0.4571

CC

4

-0.85

0.5122

0.2997

0.3571

0.5703

0.2976

0.3715

CC

5

-0.85

0.5222

0.315

0.3714

0.599

0.29

0.3767

CC

Average

na

0.5051

0.3104

0.3633

0.5781

0.3364

0.4009

BP

1

-0.87

0.4304

0.2378

0.2847

0.4722

0.2585

0.3079

BP

2

-0.87

0.4377

0.2442

0.2908

0.5259

0.2713

0.3362

BP

3

-0.85

0.4019

0.2615

0.2948

0.4908

0.2884

0.3392

BP

4

-0.84

0.3706

0.2556

0.2794

0.4854

0.2966

0.3484

BP

5

-0.87

0.4519

0.2600

0.3069

0.4608

0.2220

0.2791

BP

Average

na

0.4185

0.2518

0.2913

0.4870

0.2674

0.3222