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Table 3 Results: Hierarchy Specific SVM Score Thresholding (ltc weights). The table presents results when a single SVM score threshold is selected for each hierarchy. These results are not significantly different from those for atc weights (compare with Table 2).

From: GO for gene documents

   

Training

Testing

Hierarchy

Split

Threshold

Recall

Precision

Fscore

Recall

Precision

Fscore

MF

1

-0.83

0.5971

0.4165

0.4640

0.6382

0.4162

0.4735

MF

2

-0.81

0.5732

0.4194

0.4614

0.6525

0.4537

0.5091

MF

3

-0.81

0.5687

0.4133

0.4551

0.6522

0.4311

0.4908

MF

4

-0.83

0.6099

0.4079

0.4634

0.6928

0.4416

0.5138

MF

5

-0.83

0.6107

0.4148

0.4672

0.6880

0.4036

0.4822

MF

Average

na

0.5919

0.4144

0.4622

0.6647

0.4292

0.4939

CC

1

-0.83

0.5426

0.3135

0.3772

0.5383

0.3248

0.3810

CC

2

-0.81

0.5075

0.3248

0.3765

0.5422

0.3437

0.3971

CC

3

-0.83

0.5194

0.3136

0.3685

0.6488

0.4075

0.4763

CC

4

-0.85

0.5606

0.3080

0.3779

0.6216

0.3161

0.3929

CC

5

-0.84

0.5689

0.3284

0.3956

0.6137

0.3136

0.3993

CC

Average

na

0.5398

0.3177

0.3791

0.5929

0.3411

0.4093

BP

1

-0.82

0.3773

0.2596

0.2881

0.4204

0.2894

0.3163

BP

2

-0.84

0.4124

0.2595

0.2965

0.4912

0.2898

0.3423

BP

3

-0.86

0.4405

0.2522

0.2983

0.5366

0.2737

0.3395

BP

4

-0.85

0.3935

0.2344

0.2713

0.5211

0.2856

0.3497

BP

5

-0.85

0.4472

0.2691

0.3131

0.4680

0.2466

0.3035

BP

Average

na

0.4142

0.2550

0.2935

0.4875

0.2770

0.3303