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Table 3 Mean similarity between profiles after filtering for both the interwoven and the loop design

From: Evaluation of time profile reconstruction from complex two-color microarray designs

  Interwoven design Loop design
  lmbr lmbr_dye limmaQual anovaFix lmbr/lmbr_dye limmaQual anovaFix
lmbr_dye 0.9834     1.0000   
limmaQual 0.9980 0.9799    0.9920   
anovaFix 0.9800 0.9948 0.9755   0.9961 0.9851  
anovaMix 0.9748 0.9905 0.9701 0.9957 0.9866 0.9728 0.9905
  1. Mean profile similarity using a filtering threshold of 0.4 on all profiles estimated by each of the methods. A pairwise similarity comparison is made for all profile pairs (corresponding to the same gene) estimated by each of the two methods compared, for which at least one profile is above the filtering threshold.