Evaluation of time profile reconstruction from complex two-color microarray designs

BMC Bioinformatics

Table 4 Assessing the effect of array failure on estimated ratios for the interwoven design

Array removed	lmbr	lmbr_dye	limmaQual	anovaFix	anovaMix	Conditions affected
1	0.9615	0.9812	0.9623	0.9824	0.9784	T2/T3
2	0.8905	0.9277	0.8768	0.9317	0.9431	T1/T3
3	0.9606	0.8790	0.9521	0.8951	0.8943	T3/T5
4	0.9080	0.9353	0.8821	0.9478	0.9539	T4/T1
5	0.9601	0.9632	0.9505	0.9569	0.9592	T6/T1
6	0.9773	0.9863	0.9742	0.9852	0.9847	T5/T2
7	0.9238	0.9585	0.9317	0.9549	0.9662	T5/T6
8	0.9615	0.9599	0.9615	0.9617	0.9690	T2/T4
9	0.9816	0.9859	0.9613	0.9836	0.9845	T4/T6
Mean	0.9472	0.9530	0.9392	0.9555	0.9592

The different methods for which the influence of array failure was assessed are represented in the columns. Each row shows the mean correlation between the corresponding estimated ratios from the complete design and those obtained from a defect design (where one array was removed compared to the complete design). Mean: shows the overall mean correlation for a given method.

ISSN: 1471-2105