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Table 4 Assessing the effect of array failure on estimated ratios for the interwoven design

From: Evaluation of time profile reconstruction from complex two-color microarray designs

Array removed lmbr lmbr_dye limmaQual anovaFix anovaMix Conditions affected
1 0.9615 0.9812 0.9623 0.9824 0.9784 T2/T3
2 0.8905 0.9277 0.8768 0.9317 0.9431 T1/T3
3 0.9606 0.8790 0.9521 0.8951 0.8943 T3/T5
4 0.9080 0.9353 0.8821 0.9478 0.9539 T4/T1
5 0.9601 0.9632 0.9505 0.9569 0.9592 T6/T1
6 0.9773 0.9863 0.9742 0.9852 0.9847 T5/T2
7 0.9238 0.9585 0.9317 0.9549 0.9662 T5/T6
8 0.9615 0.9599 0.9615 0.9617 0.9690 T2/T4
9 0.9816 0.9859 0.9613 0.9836 0.9845 T4/T6
Mean 0.9472 0.9530 0.9392 0.9555 0.9592  
  1. The different methods for which the influence of array failure was assessed are represented in the columns. Each row shows the mean correlation between the corresponding estimated ratios from the complete design and those obtained from a defect design (where one array was removed compared to the complete design). Mean: shows the overall mean correlation for a given method.