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Table 7 Semantic role types and their annotation instances

From: Corpus annotation for mining biomedical events from literature

clueLoc clueTime clueExperiment
nuclear (135) early (15) electrophoretic mobility shift assays (13)
in t cells (106) subsequent (13) northern blot analysis (9)
in human monocytes (57) during t-cell activation (8) electrophoretic mobility shift assay (7)
in monocytes (50) within 30 min (6) by electrophoretic mobility shift assays (7)
in b cells (41) initial (6) using electrophoretic mobility shift assays (4)
intracellular (38) during aging (6) in transient transfection assays (4)
in jurkat cells (34) during monocytic differentiation (5) in emsas (4)
in jurkat t cells (33) simultaneous (4) in electrophoretic mobility shift assays (4)
in monocytic cells (30) during the immune response. (4) site-directed mutagenesis (3)
in t lymphocytes (28) during erythroid differentiation (4) nuclear run-on experiments (3)
surface (27) at 24 hr (4) in gel mobility shift assays (3)
cells (24) rapidly (3) immunoblot analysis (3)
cytoplasmic (21) for 6 hours (3) gel-shift analysis (3)
in these cells (20) for 6 h (3) emsa (3)
in human t cells (20) first (3) cotransfection experiments (3)
t cells (18) during the immune response (3) by northern blot analysis (3)
cellular (18) during the cell cycle (3) by flow cytometry (3)
in activated t cells (17) during t cell activation (3) by electrophoretic mobility shift assay (3)
to the nucleus (16) during myelopoiesis (3) western blotting (2)
in the nucleus (16) during monocyte differentiation (3) transient transfection experiments (2)
in hela cells (16) at 8 hr (3) supershift analysis (2)
in thp-1 cells (15) 24 h (3) rt-pcr (2)
in b lymphocytes (15) within 8 hr of infection (2) northern blot analyses (2)
b cell (15) within 6 h (2) northern analysis (2)
in u937 cells (14) within 4 hours (2) mutational analysis (2)
in fibroblasts (13) within 20 min (2) mutational analyses (2)
b cells (13) within 2 h (2) mobility shift assays (2)
transendothelial (12) second (2) inhibition studies (2)
t-cell (12) in a primary t cell response (2) in transient transfection experiments (2)
into the nucleus (12) from day 7 to day 14 of culture (2) in transient assays (2)
... ... ...
  1. Text expressions providing locational (clueLoc), temporal (clueTime) and experimental (clueExperiment) context where biological events take place. The 30 most frequently observed expressions for each type are listed.