Figure 5From: Clustering exact matches of pairwise sequence alignments by weighted linear regressionComparison of dot plots generated by MUMmer. Dot plot after aligning a set of three contigs against chromosome 3 of japonica rice. In the left, MUMmer was tuned up to find only exact matches between the contigs and the chromosome. A zoom in of certain region of the dot plot is shown. In the right MUMmer was forced to fill all gaps between seeds to yield one solid alignment per contig.Back to article page