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Figure 5 | BMC Bioinformatics

Figure 5

From: Clustering exact matches of pairwise sequence alignments by weighted linear regression

Figure 5

Comparison of dot plots generated by MUMmer. Dot plot after aligning a set of three contigs against chromosome 3 of japonica rice. In the left, MUMmer was tuned up to find only exact matches between the contigs and the chromosome. A zoom in of certain region of the dot plot is shown. In the right MUMmer was forced to fill all gaps between seeds to yield one solid alignment per contig.

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