From: Clustering exact matches of pairwise sequence alignments by weighted linear regression
No. of contigs | Average contig length | Time in MUMmer | Time using linear regression | |
---|---|---|---|---|
Set 1 | 2 | 60848 | 102.003 s | 0.922 + 0.037 = 0.959 s |
Set 2 | 3 | 43489 | 124.064 s | 0.823 + 0.034 = 0.857 s |
Set 3 | 3 | 41227 | 108.776 s | 0.889 + 0.034 = 0.923 s |
Set 4 | 9 | 14389 | 39.470 s | 0.881 + 0.047 = 0.928 s |
Set 5 | 44 | 2621 | 5.182 s | 0.881 + 0.127 = 1.008 s |
Set 6 | 36 | 2210 | 2.963 s | 0.884 + 0.102 = 0.986 s |
Set 7 | 18 | 1810 | 1.772 s | 0.861 + 0.053 = 0.914 s |