From: SeqAn An efficient, generic C++ library for sequence analysis
Species | Â | MUMer | MGA | SeqAn | |||
---|---|---|---|---|---|---|---|
 | size (Mbp) | time (m:s) | space (MB) | time (m:s) | space (MB) | time (m:s) | space (MB) |
C. trachomatis D/UW-3/CX | 1.043 | Â | Â | Â | Â | Â | Â |
C. muridarum Nigg | 1.073 | - | - | 0:06 | 33.8 | 0:04 | 31.6 |
C. trachomatis A/HAR-13 | 1.044 | Â | Â | Â | Â | Â | Â |
E. coli K12 | 4.640 | Â | Â | Â | Â | Â | Â |
E. coli O157:H7 str. Sakai | 5.498 | Â | Â | Â | Â | Â | Â |
E. coli CFT073 | 5.231 | - | - | 105:40 | 353.5 | 0:58 | 304.6 |
E. coli UTI89 | 5.066 | Â | Â | Â | Â | Â | Â |
E. coli 536 | 4.939 | Â | Â | Â | Â | Â | Â |
E. coli APEC O1 | 5.082 | Â | Â | Â | Â | Â | Â |
H. sapiens (chr. 21) | 46.94 | 2:25 | 568 | 4:44 | 1188 | 4:06 | 1307 |
M. musculus (chr. 16) | 98.25 | Â | Â | Â | Â | Â | Â |
H. sapiens (chr. 16) | 98.25 | 2:55 | 1362 | 18:48 | 1500 | 5:38 | 1627 |
P. troglodytes (chr. 16) | 88.83 | Â | Â | Â | Â | Â | Â |
 |  |  |  |  |  | external string | |
H. sapiens (chr. 1) | 247.2 | insufficient memory | insufficient memory | 66:20 | 510 | ||
M. musculus (chr. 1) | 197.1 | Â | Â | Â | Â | Â | Â |