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Table 3 The promoter prediction accuracies for the test data set made up of 186 promoter sequences and 150 non-promoter sequences using five kinds of tools and our methods.

From: Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides

Tool

S n (%)

S p (%)

A c (%)

CC

NNPP(threshold 0.8)

69.89

60.75

65.32

0.14

Soft Berry(TSSW)

67.74

81.29

74.52

0.48

Promoter Scan version 1.7

67.20

88.65

77.93

0.57

Dragon Promoter Finder version 1.5

30.65

65.52

48.08

0.12

Promoter 2.0 Prediction Server

52.15

91.51

71.83

0.49

Our method (M3)

86.02

93.57

89.79

0.78