From: A mixture model approach to sample size estimation in two-sample comparative microarray experiments
No correlation | With correlation | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
π 0 | pFDR | power | True | JMB (sd) | HZW (sd) | PC (sd) | PMMP (sd) | True | JMB (sd) | HZW (sd) | PC (sd) | PMMP (sd) |
0.7 | 0.05 | 0.6 | 6 | 6 (0.4) | 11 (0.0) | 11 (1.6) | 6 (0.4) | 6 | 6 (0.5) | 11 (0.0) | 11 (1.4) | 6 (0.5) |
0.7 | 0.05 | 0.7 | 8 | 8 (0.6) | 18 (0.2) | 14 (2.8) | 7 (1.0) | 8 | 8 (1.0) | 18 (0.0) | 14 (2.3) | 7 (0.9) |
0.7 | 0.05 | 0.8 | 11 | 11 (1.5) | 39 (0.7) | 20 (4.8) | 9 (2.5) | 11 | 11 (2.0) | 38 (0.5) | 19 (4.1) | 9 (2.0) |
0.7 | 0.05 | 0.9 | 23 | 24 (3.4) | 146 (2.4) | 30 (9.5) | 13 (6.5) | 23 | 23 (4.5) | 145 (1.6) | 29 (7.9) | 15 (6.8) |
0.7 | 0.01 | 0.6 | 9 | 9 (0.5) | 17 (0.5) | 16 (2.7) | 9 (0.9) | 9 | 9 (0.7) | 17 (0.5) | 16 (2.4) | 8 (0.8) |
0.7 | 0.01 | 0.7 | 11 | 11 (1.1) | 28 (0.5) | 21 (4.6) | 10 (1.7) | 11 | 11 (1.7) | 28 (0.5) | 21 (3.8) | 10 (1.7) |
0.7 | 0.01 | 0.8 | 16 | 16 (2.4) | 60 (1.1) | 28 (7.9) | 13 (4.5) | 16 | 16 (3.3) | 60 (0.8) | 27 (6.4) | 13 (3.4) |
0.7 | 0.01 | 0.9 | 34 | 37 (6.0) | 231 (4.2) | 42 (14.5) | 18 (10.0) | 32 | 36 (7.5) | 229 (2.8) | 40 (11.9) | 22 (11.3) |
0.9 | 0.05 | 0.6 | 9 | 9 (2.1) | 16 (0.5) | 24 (7.8) | 9 (3.9) | 8 | 9 (2.6) | 16 (0.5) | 23 (6.6) | 9 (3.1) |
0.9 | 0.05 | 0.7 | 11 | 11 (3.5) | 27 (0.8) | 31 (11.4) | 11 (7.1) | 10 | 12 (4.1) | 27 (0.8) | 30 (9.7) | 11 (6.6) |
0.9 | 0.05 | 0.8 | 16 | 16 (5.2) | 59 (1.7) | 41 (16.7) | 15 (11.1) | 14 | 16 (5.9) | 58 (1.7) | 41 (14.4) | 15 (11.8) |
0.9 | 0.05 | 0.9 | 34 | 26 (7.6) | 227(6.6) | 60 (26.8) | 21 (17.9) | 29 | 25 (8.5) | 225 (6.7) | 59 (23.1) | 22 (18.8) |
0.9 | 0.01 | 0.6 | 11 | 12 (3.3) | 22 (0.7) | 33 (11.8) | 12 (6.0) | 11 | 12 (4.1) | 22 (0.6) | 32 (9.9) | 12 (4.9) |
0.9 | 0.01 | 0.7 | 14 | 15 (5.3) | 38 (1.2) | 43 (16.9) | 15 (10.4) | 13 | 16 (6.0) | 37 (1.2) | 42 (14.4) | 15 (9.9) |
0.9 | 0.01 | 0.8 | 21 | 21 (7.4) | 82 (2.6) | 56 (24.3) | 20 (15.6) | 19 | 21 (8.4) | 81 (2.7) | 55 (20.9) | 21 (16.8) |
0.9 | 0.01 | 0.9 | 46 | 35 (10.0) | 318 (10.0) | 79 (37.2) | 27 (24.3) | 38 | 33 (11.3) | 316 (11.3) | 78 (32.0) | 29 (25.1) |
0.7 | 0.05 | 0.6 | 6 | 6 (0.2) | 6 (0.0) | 10 (1.0) | 6 (1.1) | 6 | 6 (0.3) | 6 (0.0) | 10 (1.1) | 5 (0.7) |
0.7 | 0.05 | 0.7 | 7 | 8 (0.7) | 8 (0.3) | 12 (1.7) | 8 (2.4) | 7 | 8 (0.7) | 8 (0.1) | 12 (1.8) | 7 (1.6) |
0.7 | 0.05 | 0.8 | 9 | 11 (1.4) | 16 (0.4) | 16 (2.9) | 10 (4.9) | 9 | 11 (1.5) | 16 (0.2) | 16 (3.2) | 10 (3.8) |
0.7 | 0.05 | 0.9 | 14 | 23 (4.1) | 56 (1.2) | 24 (5.5) | 18 (11.3) | 15 | 24 (5.3) | 56 (1.0) | 25 (6.1) | 14 (7.8) |
0.7 | 0.01 | 0.6 | 8 | 8 (0.6) | 8 (0.0) | 11 (1.7) | 8 (2.2) | 8 | 8 (0.7) | 8 (0.0) | 14 (1.8) | 8 (1.0) |
0.7 | 0.01 | 0.7 | 10 | 11 (1.1) | 12 0.1) | 14 (2.8) | 11 (4.3) | 10 | 11 (1.3) | 12 (0.1) | 18 (2.8) | 10 (3.1) |
0.7 | 0.01 | 0.8 | 13 | 16 (2.5) | 23 (0.5) | 24 (4.6) | 15 (8.4) | 15 | 16 (2.5) | 23 (0.3) | 24 (5.0) | 13 (6.4) |
0.7 | 0.01 | 0.9 | 26 | 36 (7.2) | 84 (1.8) | 35 (8.4) | 27 (17.8) | 30 | 37 (8.8) | 83 (1.3) | 34 (9.4) | 20 (12.0) |
0.9 | 0.05 | 0.6 | 8 | 10 (2.0) | 7 (0.4) | 21 (8.2) | 8 (1.6) | 8 | 10 (2.3) | 8 (0.4) | 24 (8.5) | 9 (3.6) |
0.9 | 0.05 | 0.7 | 9 | 13 (3.3) | 11 (0.7) | 27 (12.1) | 10 (3.9) | 9 | 13 (3.4) | 12 (0.7) | 32 (12.8) | 11 (5.7) |
0.9 | 0.05 | 0.8 | 12 | 18 (5.5) | 21 (1.2) | 37 (19.0) | 13 (8.0) | 13 | 19 (5.0) | 23 (1.5) | 44 (19.7) | 14 (8.7) |
0.9 | 0.05 | 0.9 | 24 | 31 (8.5) | 76 (4.6) | 54 (30.2) | 18 (14.5) | 25 | 31 (7.9) | 85 5.4) | 65 (32.6) | 20 (14.5) |
0.9 | 0.01 | 0.6 | 11 | 13 (3.1) | 9 (0.5) | 29 (12.6) | 11 (2.4) | 11 | 13 (3.6) | 10 (0.6) | 34 (13.2) | 12 (5.6) |
0.9 | 0.01 | 0.7 | 13 | 17 (5.0) | 16 (0.6) | 38 (18.5) | 14 (6.2) | 14 | 19 (5.0) | 17 (0.8) | 45 (19.6) | 15 (8.2) |
0.9 | 0.01 | 0.8 | 18 | 25 (8.1) | 28 (1.5) | 50 (27.2) | 17 (11.8) | 19 | 26 (7.1) | 31 (1.9) | 60 (29.2) | 19 (12.3) |
0.9 | 0.01 | 0.9 | 51 | 43 (11.4) | 103 (6.2) | 72 (42.8) | 23 (19.8) | 53 | 43 (10.9) | 115 (7.9) | 88 (46.3) | 26 (19.7) |