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Table 1 Datasets

From: Assessment of composite motif discovery methods

Sequence set

Sequences

Modules

Total size (bp)

Module size, min-max (avg)

AP1-Ets

16

17

14860

14 – 99 (27)

AP1-NFAT

8

11

6893

14 – 19 (16)

AP1-NFκB

7

8

6532

18 – 135 (53)

CEBP-NFκB

8

8

7308

44 – 118 (84)

Ebox-Ets

4

6

3489

16 – 50 (25)

Ets-AML

5

5

4053

13 – 30 (19)

IRF-NFκB

6

6

5344

23 – 71 (43)

NFκB-HMGIY

6

7

5393

10 – 32 (13)

PU1-IRF

5

5

4530

12 – 14 (13)

Sp1-Ets

7

8

5787

16 – 117 (37)

Liver

12

14

11943

26 – 176 (112)

Muscle

24

24

20427

14 – 294 (120)

  1. A brief overview of the ten TRANSCompel sequence sets and the liver and muscle datasets used in the assessment. Further information can be found in Additional File 1.