Table 2 Example genes correctly predicted by DISPattern but not predicted by BBH
From: A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Gene(id) | COG | Pattern | Occurrence |
|---|---|---|---|
Rv2141c (id: 57116951) | COG0624 Acetylornithine deacetylase Succinyl-diaminopimelate desuccinylase and related deacylases | {COG0167 COG0624 COG1881} | NC_002755 NC_002945 NC_000962 |
Rv0558 (id: 57116754) | COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis | {COG0438 COG2226} | NC_002935 NC_004369 NC_002944 NC_002755 NC_002945 NC_000962 |
Rv1319c (id: 15608459) | COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) | {COG1637 COG2114 COG2114 COG2114} | NC_002755 NC_002945 NC_000962 |
Rv1034c (id: 15608174) | COG3039 Transposase and inactivated derivatives, IS5 family | {COG0642 COG0745 COG2156 COG2216 COG3039} | NC_002755 NC_002945 NC_000962 |
nrp (id: 15607243) | COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes | {COG0227 COG0474 COG0523 COG0664 COG2217 COG3320 COG3336} | NC_002755 NC_002945 NC_000962 |