Table 2 Genes in the identified prognostic signature. For each probe set the first column lists the subset of the eighty pairs which contain it. The pairs are ordered from 1 to 80 by their scores.
From: Merging microarray data from separate breast cancer studies provides a robust prognostic test
Pair Rank | Probe Set | Gene Symbol | Gene Title |
|---|---|---|---|
1, 43 | 91816_f_at | RKHD1 | ring finger and KH domain containing 1 |
1, 6, 73 | 204641_at | NEK2 | NIMA (never in mitosis gene a)-related kinase 2 |
2 | 213139_at | SNAI2 | snail homolog 2 (Drosophila) |
2, 4, 9, 33 | 212188_at | KCTD12 | potassium channel tetramerisation domain containing 12 |
3 | 212022_s_at | MKI67 | antigen identified by monoclonal antibody Ki-67 |
3, 61, 80 | 219716_at | APOL6 | apolipoprotein L, 6 |
4 | 205264_at | CD3EAP | CD3e molecule, epsilon associated protein |
5 | 206687_s_at | PTPN6 | protein tyrosine phosphatase, non-receptor type 6 |
5, 67 | 218009_s_at | PRC1 | protein regulator of cytokinesis 1 |
6, 35, 39, 55 | 219579_at | RAB3IL1 | RAB3A interacting protein (rabin3)-like 1 |
7 | 221824_s_at | MARCH8 | membrane-associated ring finger (C3HC4) 8 |
7 | 209574_s_at | C18orf1 | chromosome 18 open reading frame 1 |
8 | 210199_at | CRYAA | crystallin, alpha A |
8, 24, 26, 31 | 219493_at | SHCBP1 | SHC SH2-domain binding protein 1 |
9 | 204177_s_at | KLHL20 | kelch-like 20 (Drosophila) |
10, 34 | 203010_at | STAT5A | signal transducer and activator of transcription 5A |
10 | 212747_at | ANKS1A | ankyrin repeat and sterile alpha motif domain containing 1A |
11, 19, 21 | 205034_at | CCNE2 | cyclin E2 |
11, 65 | 217427_s_at | HIRA | HIR histone cell cycle regulation defective homolog A (S. cerevisiae) |
12, 46, 54, 74 | 222077_s_at | RACGAP1 | Rac GTPase activating protein 1 |
12, 62 | 36545_s_at | SFI1 | Sfi1 homolog, spindle assembly associated (yeast) |
13, 17, 72 | 218883_s_at | MLF1IP | MLF1 interacting protein |
13 | 203332_s_at | INPP5D | inositol polyphosphate-5-phosphatase, 145kDa |
14, 15 | 211584_s_at | NPAT | nuclear protein, ataxia-telangiectasia locus |
14 | 219512_at | C20orf172 | chromosome 20 open reading frame 172 |
15 | 221193_s_at | ZCCHC10 | zinc finger, CCHC domain containing 10 |
16 | 221521_s_at | GINS2 | GINS complex subunit 2 (Psf2 homolog) |
16 | 209671_x_at | TRA@///TRAC | T cell receptor alpha locus///T cell receptor alpha locus |
17 | 208952_s_at | LARP5 | La ribonucleoprotein domain family, member 5 |
18, 30 | 218726_at | DKFZp762E1312 | hypothetical protein DKFZp762E1312 |
18, 51 | 211581_x_at | LST1 | leukocyte specific transcript 1 |
19 | 221273_s_at | DKFZP761H1710 | hypothetical protein DKFZp761H1710 |
20 | 205395_s_at | MRE11A | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) |
20, 59 | 214973_x_at | IGHD | immunoglobulin heavy constant delta |
21, 27 | 211881_x_at | IGLJ3 | immunoglobulin lambda joining 3 |
22 | 202602_s_at | HTATSF1 | HIV-1 Tat specific factor 1 |
22 | 218143_s_at | SCAMP2 | secretory carrier membrane protein 2 |
23 | 212911_at | DNAJC16 | DnaJ (Hsp40) homolog, subfamily C, member 16 |
23 | 204817_at | ESPL1 | extra spindle poles like 1 (S. cerevisiae) |
24 | 215783_s_at | ALPL | alkaline phosphatase, liver/bone/kidney |
25, 38, 39, 44, 52, 71 | 204825_at | MELK | maternal embryonic leucine zipper kinase |
25 | 213689_x_at | RPL5 | Ribosomal protein L5 |
26 | 206545_at | CD28 | CD28 molecule |
27 | 206364_at | KIF14 | kinesin family member 14 |
28, 60, 61 | 208079_s_at | AURKA | aurora kinase A |
28 | 214955_at | TMPRSS6 | transmembrane protease, serine 6 |
29 | 210966_x_at | LARP1 | La ribonucleoprotein domain family, member 1 |
29 | 218830_at | RPL26L1 | ribosomal protein L26-like 1 |
30 | 204498_s_at | ADCY9 | adenylate cyclase 9 |
31 | 206211_at | SELE | selectin E (endothelial adhesion molecule 1) |
32, 34, 69 | 201890_at | RRM2 | ribonucleotide reductase M2 polypeptide |
32 | 219298_at | ECHDC3 | enoyl Coenzyme A hydratase domain containing 3 |
33 | 204847_at | ZBTB11 | zinc finger and BTB domain containing 11 |
35, 62 | 203214_x_at | CDC2 | cell division cycle 2, G1 to S and G2 to M |
36 | 204605_at | CGRRF1 | cell growth regulator with ring finger domain 1 |
36 | 211251_x_at | NFYC | nuclear transcription factor Y, gamma |
37, 65 | 213008_at | KIAA1794 | KIAA1794 |
37, 73 | 210042_s_at | CTSZ | cathepsin Z |
38 | 203595_s_at | IFIT5 | interferon-induced protein with tetratricopeptide repeats 5 |
40 | 221529_s_at | PLVAP | plasmalemma vesicle associated protein |
40 | 202114_at | SNX2 | sorting nexin 2 |
41 | 211779_x_at | AP2A2 | adaptor-related protein complex 2, alpha 2 subunit |
41, 63 | 202324_s_at | ACBD3 | acyl-Coenzyme A binding domain containing 3 |
42, 57 | 201821_s_at | TIMM17A | translocase of inner mitochondrial membrane 17 homolog A (yeast) |
42 | 201551_s_at | LAMP1 | lysosomal-associated membrane protein 1 |
43 | 48808_at | DHFR | dihydrofolate reductase |
44 | 211643_x_at | LOC651961 | Myosin-reactive immunoglobulin light chain variable region |
45 | 210396_s_at | LOC440354 | PI-3-kinase-related kinase SMG-1 pseudogene |
45 | 201070_x_at | SF3B1 | splicing factor 3b, subunit 1, 155kDa |
46 | 207391_s_at | PIP5K1A | phosphatidylinositol-4-phosphate 5-kinase, type I, alpha |
47 | 200800_s_at | HSPA1A | heat shock 70 kDa protein 1A |
47 | 201009_s_at | TXNIP | thioredoxin interacting protein |
48 | 203530_s_at | STX4 | syntaxin 4 |
48, 50 | 218085_at | CHMP5 | chromatin modifying protein 5 |
49, 68, 70 | 219555_s_at | C16orf60 | chromosome 16 open reading frame 60 |
49 | 210419_at | BARX2 | BarH-like homeobox 2 |
50 | 214119_s_at | FKBP1A | FK506 binding protein 1A, 12 kDa |
51, 58 | 203362_s_at | MAD2L1 | MAD2 mitotic arrest deficient-like 1 (yeast) |
52 | 218910_at | TMEM16K | transmembrane protein 16K |
53 | 208838_at | KIAA0829 | KIAA0829 protein |
53 | 212081_x_at | BAT2 | HLA-B associated transcript 2 |
54 | 202115_s_at | NOC2L | nucleolar complex associated 2 homolog (S. cerevisiae) |
55 | 209714_s_at | CDKN3 | cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase) |
56 | 205701_at | IPO8 | importin 8 |
56 | 205063_at | SIP1 | survival of motor neuron protein interacting protein 1 |
57 | 200918_s_at | SRPR | signal recognition particle receptor ('docking protein') |
58 | 212527_at | D15Wsu75e | DNA segment, Chr 15, Wayne State University 75, expressed |
59 | 204244_s_at | DBF4 | DBF4 homolog (S. cerevisiae) |
60 | 214508_x_at | CREM | cAMP responsive element modulator |
63 | 200787_s_at | PEA15 | phosphoprotein enriched in astrocytes 15 |
64 | 203764_at | DLG7 | discs, large homolog 7 (Drosophila) |
64 | 205877_s_at | ZC3H7B | zinc finger CCCH-type containing 7B |
66 | 200848_at | AHCYL1 | S-adenosylhomocysteine hydrolase-like 1 |
66 | 201091_s_at | CBX3 | chromobox homolog 3 (HP1 gamma homolog, Drosophila) |
67 | 64064_at | GIMAP5 | GTPase, IMAP family member 5 |
68 | 211649_x_at | IGHG1 | Immunoglobulin heavy constant gamma 1 (G1m marker) |
69 | 204398_s_at | EML2 | echinoderm microtubule associated protein like 2 |
70 | 220433_at | PRRG3 | proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) |
71 | 219169_s_at | TFB1M | transcription factor B1, mitochondrial |
72 | 34689_at | TREX1 | three prime repair exonuclease 1 |
74 | 212604_at | MRPS31 | mitochondrial ribosomal protein S31 |
75 | 213907_at | EEF1E1 | Eukaryotic translation elongation factor 1 epsilon 1 |
75 | 209622_at | STK16 | serine/threonine kinase 16 |
76 | 209716_at | CSF1 | colony stimulating factor 1 (macrophage) |
76 | 219575_s_at | peptide deformylase (mitochondrial) | |
77 | 219328_at | DDX31 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 |
77 | 213121_at | SNRP70 | small nuclear ribonucleoprotein 70 kDa polypeptide (RNP antigen) |
78 | 218870_at | ARHGAP15 | Rho GTPase activating protein 15 |
78 | 219105_x_at | ORC6L | origin recognition complex, subunit 6 like (yeast) |
79 | 216510_x_at | IGHA1 | immunoglobulin heavy constant alpha 1 |
79 | 215207_x_at | YDD19 | YDD19 protein |
80 | 219918_s_at | ASPM | asp (abnormal spindle)-like, microcephaly associated (Drosophila) |