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Table 2 Model of calcium oscillations. Simple model of calcium oscillations [37]. Parameters: k1 = 0.212, k3 = 1.52, K4 = 0.19, k5 = 4.88, K6 = 1.18, k7 = 1.24, k8 = 32.24, K9 = 29.09, k10 = 13.58, k11 = 153, K12 = 0.16. k2 is bifurcation parameter and is set to different values in simulations depending on the desired behavior.

From: Information transfer in signaling pathways: A study using coupled simulated and experimental data

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Kinetics

 

G α

v1 = k1

 

G α MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa4ajaSqaaiabbEeahnaaBaaameaacqaHXoqyaeqaaaWcbeGccaGLsgcaaaa@3059@

G α

v2 = k2 × [G α ]

G α

PLC MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa4ajaSqaaiabbcfaqjabbYeamjabboeadbqabOGaayPKHaaaaa@30C0@

 

ν 3 = k 3 × [ G α ] × [ PLC ] K 4 + [ G α ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqyVd42aaSbaaSqaaiabiodaZaqabaGccqGH9aqpjuaGdaWcaaqaaiabdUgaRnaaBaaabaGaeG4mamdabeaacqGHxdaTcqGGBbWwcqqGhbWrdaWgaaqaaiabeg7aHbqabaGaeiyxa0Laey41aqRaei4waSLaeeiuaaLaeeitaWKaee4qamKaeiyxa0fabaGaem4saS0aaSbaaeaacqaI0aanaeqaaiabgUcaRiabcUfaBjabbEeahnaaBaaabaGaeqySdegabeaacqGGDbqxaaaaaa@4A92@

G α

Ca 2+ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa4ajaSqaaiabboeadjabbggaHnaaCaaameqabaGaeeOmaiJaee4kaScaaaWcbeGccaGLsgcaaaa@31C4@

 

ν 4 = k 5 × [ G α ] × [ Ca 2 + ] K 6 + [ G α ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqyVd42aaSbaaSqaaiabisda0aqabaGccqGH9aqpjuaGdaWcaaqaaiabdUgaRnaaBaaabaGaeGynaudabeaacqGHxdaTcqGGBbWwcqqGhbWrdaWgaaqaaiabeg7aHbqabaGaeiyxa0Laey41aqRaei4waSLaee4qamKaeeyyae2aaWbaaeqabaGaeGOmaiJaey4kaScaaiabc2faDbqaaiabdUealnaaBaaabaGaeGOnaydabeaacqGHRaWkcqGGBbWwcqqGhbWrdaWgaaqaaiabeg7aHbqabaGaeiyxa0faaaaa@4B95@

 

G α MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa4ajaSqaaiabbEeahnaaBaaameaacqaHXoqyaeqaaaWcbeGccaGLsgcaaaa@3059@

PLC

v5 = k7 × [G α ]

PLC

 

ν 6 = k 8 × [ PLC ] K 9 + [ PLC ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqyVd42aaSbaaSqaaiabiAda2aqabaGccqGH9aqpjuaGdaWcaaqaaiabdUgaRnaaBaaabaGaeGioaGdabeaacqGHxdaTcqGGBbWwcqqGqbaucqqGmbatcqqGdbWqcqGGDbqxaeaacqWGlbWsdaWgaaqaaiabiMda5aqabaGaey4kaSIaei4waSLaeeiuaaLaeeitaWKaee4qamKaeiyxa0faaaaa@43BE@

 

G α MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaWaa4ajaSqaaiabbEeahnaaBaaameaacqaHXoqyaeqaaaWcbeGccaGLsgcaaaa@3059@

Ca2+

v7 = k10 × [G α ]

Ca2+

 

ν 8 = k 11 × [ Ca 2+ ] K 12 + [ Ca 2+ ] MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaeqyVd42aaSbaaSqaaiabiIda4aqabaGccqGH9aqpjuaGdaWcaaqaaiabdUgaRnaaBaaabaGaeGymaeJaeGymaedabeaacqGHxdaTcqGGBbWwcqqGdbWqcqqGHbqydaahaaqabeaacqqGYaGmcqqGRaWkaaGaeiyxa0fabaGaem4saS0aaSbaaeaacqaIXaqmcqaIYaGmaeqaaiabgUcaRiabcUfaBjabboeadjabbggaHnaaCaaabeqaaiabbkdaYiabbUcaRaaacqGGDbqxaaaaaa@4760@