Prediction of the outcome of preoperative chemotherapy in breast cancer using DNA probes that provide information on both complete and incomplete responses

Table 4 Numbers of false positives and false negatives for the k probe sets predictors (0 ≤ k ≤ 50) for the external validation data (test set 1)

k	FP	FN	FP+FN	k	FP	FN	FP+FN	k	FP	FN	FP+FN
0	38	13	51	17	8	3	11	34	5	2	7
1	18	7	25	18	8	3	11	35	5	2	7
2	18	5	23	19	9	2	11	36	5	2	7
3	16	4	20	20	8	2	10	37	5	2	7
4	15	4	19	21	8	2	10	38	5	3	8
5	15	4	19	22	6	2	8	39	5	2	7
6	15	3	18	23	7	2	9	40	5	2	7
7	13	3	16	24	7	3	10	41	5	2	7
8	12	4	16	25	7	2	9	42	5	2	7
9	9	4	13	26	6	2	8	43	5	2	7
10	7	4	11	27	6	1	7	44	6	2	8
11	7	3	10	28	5	3	8	45	6	2	8
12	7	3	10	29	6	1	7	46	6	2	8
13	7	3	10	30	6	1	7	47	6	2	8
14	8	3	11	31	5	2	7	48	6	2	8
15	7	3	10	32	5	2	8	49	6	2	8
16	8	3	11	33	4	2	6	50	6	2	8

ISSN: 1471-2105

k	FP	FN	FP+FN	k	FP	FN	FP+FN	k	FP	FN	FP+FN
0	38	13	51	17	8	3	11	34	5	2	7
1	18	7	25	18	8	3	11	35	5	2	7
2	18	5	23	19	9	2	11	36	5	2	7
3	16	4	20	20	8	2	10	37	5	2	7
4	15	4	19	21	8	2	10	38	5	3	8
5	15	4	19	22	6	2	8	39	5	2	7
6	15	3	18	23	7	2	9	40	5	2	7
7	13	3	16	24	7	3	10	41	5	2	7
8	12	4	16	25	7	2	9	42	5	2	7
9	9	4	13	26	6	2	8	43	5	2	7
10	7	4	11	27	6	1	7	44	6	2	8
11	7	3	10	28	5	3	8	45	6	2	8
12	7	3	10	29	6	1	7	46	6	2	8
13	7	3	10	30	6	1	7	47	6	2	8
14	8	3	11	31	5	2	7	48	6	2	8
15	7	3	10	32	5	2	8	49	6	2	8
16	8	3	11	33	4	2	6	50	6	2	8

k	FP	FN	FP+FN	k	FP	FN	FP+FN	k	FP	FN	FP+FN
0	38	13	51	17	8	3	11	34	5	2	7
1	18	7	25	18	8	3	11	35	5	2	7
2	18	5	23	19	9	2	11	36	5	2	7
3	16	4	20	20	8	2	10	37	5	2	7
4	15	4	19	21	8	2	10	38	5	3	8
5	15	4	19	22	6	2	8	39	5	2	7
6	15	3	18	23	7	2	9	40	5	2	7
7	13	3	16	24	7	3	10	41	5	2	7
8	12	4	16	25	7	2	9	42	5	2	7
9	9	4	13	26	6	2	8	43	5	2	7
10	7	4	11	27	6	1	7	44	6	2	8
11	7	3	10	28	5	3	8	45	6	2	8
12	7	3	10	29	6	1	7	46	6	2	8
13	7	3	10	30	6	1	7	47	6	2	8
14	8	3	11	31	5	2	7	48	6	2	8
15	7	3	10	32	5	2	8	49	6	2	8
16	8	3	11	33	4	2	6	50	6	2	8

k	FP	FN	FP+FN	k	FP	FN	FP+FN	k	FP	FN	FP+FN
0	38	13	51	17	8	3	11	34	5	2	7
1	18	7	25	18	8	3	11	35	5	2	7
2	18	5	23	19	9	2	11	36	5	2	7
3	16	4	20	20	8	2	10	37	5	2	7
4	15	4	19	21	8	2	10	38	5	3	8
5	15	4	19	22	6	2	8	39	5	2	7
6	15	3	18	23	7	2	9	40	5	2	7
7	13	3	16	24	7	3	10	41	5	2	7
8	12	4	16	25	7	2	9	42	5	2	7
9	9	4	13	26	6	2	8	43	5	2	7
10	7	4	11	27	6	1	7	44	6	2	8
11	7	3	10	28	5	3	8	45	6	2	8
12	7	3	10	29	6	1	7	46	6	2	8
13	7	3	10	30	6	1	7	47	6	2	8
14	8	3	11	31	5	2	7	48	6	2	8
15	7	3	10	32	5	2	8	49	6	2	8
16	8	3	11	33	4	2	6	50	6	2	8