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Table 1 Matching scores of the rearranged phase positions for the 145 genes sorted by the eight seriation methods relative to the known (annotated) phase positions.

From: Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles

Seriation method

Match

Weighted match

Total deviation

(a) SVD1

0.5103

0.6862

1584

(b) SVD2

0.4552

0.6483

1688

(c) SOM

0.6828

0.8068

907

(d) R2E

0.6759

0.8034

915

(e) HCT_RAM

0.5172

0.6759

1665

(f) HCT_OPT

0.6552

0.7966

1056

(g) HCT_SOM

0.5931

0.7379

1288

(h) HCT_R2E

0.7103

0.8241

818

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BMC Bioinformatics

ISSN: 1471-2105

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