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Figure 1 | BMC Bioinformatics

Figure 1

From: Computational evaluation of TIS annotation for prokaryotic genomes

Figure 1

Three elementary sequence patterns around TISs. We selected three genomes with widely different genomic GC content to illustrate the content of three elementary PWMs associated with different TISs. Three genomes are from top to bottom: Sulfolobus solfataricus P2 (35.8%), Escherichia coli K12 (50.8%), and Pseudomonas aeruginosa PAO1 (66.6%). Logos from the left to right correspond to W F d MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaem4vaC1aaSbaaSqaamrr1ngBPrwtHrhAYaqeguuDJXwAKbstHrhAGq1DVbaceaGae8xHWB0aaSbaaWqaaiabdsgaKbqabaaaleqaaaaa@3AA3@ , W T MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaem4vaC1aaSbaaSqaamrr1ngBPrwtHrhAYaqeguuDJXwAKbstHrhAGq1DVbaceaGae83KWtfabeaaaaa@3936@ and W F u MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacPC6xNi=xH8viVGI8Gi=hEeeu0xXdbba9frFj0xb9qqpG0dXdb9aspeI8k8fiI+fsY=rqGqVepae9pg0db9vqaiVgFr0xfr=xfr=xc9adbaqaaeGaciGaaiaabeqaaeqabiWaaaGcbaGaem4vaC1aaSbaaSqaamrr1ngBPrwtHrhAYaqeguuDJXwAKbstHrhAGq1DVbaceaGae8xHWB0aaSbaaWqaaiabdwha1bqabaaaleqaaaaa@3AC5@ respectively. Data are obtained from the reference set and logos are generated by [11].

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