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Table 1 Comparison of Tagger and Snagger. Comparison across 10 ENCODE regions between the web server Tagger and Snagger for: (a) the total of tagSNPs selected, (b) the average design score for selected tagSNPs, and (c) the percent coverage of the chromosome using an LD threshold of r2 ≥ 0.8.

From: Snagger: A user-friendly program for incorporating additional information for tagSNP selection

  a. Total Number of tagSNPs b. Average Design Score c. Chromosomal Coverage at Maximum r2 = 0.8
ENCODE Region Tagger Snagger Tagger Snagger Tagger Snagger
ENm010 137 128 0.846 0.851 0.977 0.977
ENm013 107 82 0.953 0.972 0.992 0.996
ENm014 155 129 0.985 0.991 0.993 0.995
ENr112 192 162 1.035 1.029 0.996 0.998
ENr113 167 143 0.947 0.969 0.994 0.994
ENr123 193 139 0.846 0.858 0.989 0.993
ENr131 215 192 1.044 1.046 0.995 0.993
ENr213 129 112 1.024 1.033 0.994 0.992
ENr232 127 120 0.998 1.006 0.978 0.978
ENr321 122 114 1.009 1.022 0.987 0.988