Table 2 Pedro Ontology Sources
From: Data capture in bioinformatics: requirements and experiences with Pedro
Class/Interface | Function |
|---|---|
OntologySource | Implementing classes provide ontology terms to an OntologyViewer. |
TreeOntologySource | Extends OntologySource but implementing classes provide ontology terms that can be organised as a tree structure. |
DictionaryDescriptionSupport | Implementing classes provide a definition for OntologyTerms. |
ImageDescriptionSupport | Implementing classes can provide images based on an identifier. |
URLDescriptionSupport | Implementing classes can provide a link to a webpage. |
SingleColumnTextSource, OntologySource | An ontology source that reads terms from a text file that contains a single column of ontology terms. |
AbstractTreeOntologySource, TreeOntologySource | A class to manage a tree of terms. This is extended in the classes below. |
TabIndentedTextSource | Extends AbstractTreeOntologySource. This is an ontology source that reads terms from a tab-indented text file. |
XMLOntologySource | Extends AbstractTreeOntologySource. This is an ontology source that reads its terms from a bespoke XML format. |