Skip to main content

Table 1 Performance comparison of TOFI-alpha and TOFI-beta

From: A high-throughput pipeline for designing microarray-based pathogen diagnostic assays

Genome (length in base pairs) Near-neighbor (length in base pairs) TOFI-alpha runtime (hrs) TOFI-beta runtime (hrs) Improvement
Yersinia pestis (4653728) Yersinia pseudotuberculosis (4744671) 11 4 275%
Francisella tularensis (1892819) Francisella philomiragia (2049711) 22 5 440%
Burkholderia mallei (5835527) Burkholderia thailandensis (6723972) 21 7 300%
Brucella melitensis (3294931) Agrobacterium tumefaciens (2074782) 55 21 261%
  1. The runtimes are rounded off to the nearest hour. All runs were carried out on 74 processors.