Table 1 Performance comparison of TOFI-alpha and TOFI-beta
From: A high-throughput pipeline for designing microarray-based pathogen diagnostic assays
Genome (length in base pairs) | Near-neighbor (length in base pairs) | TOFI-alpha runtime (hrs) | TOFI-beta runtime (hrs) | Improvement |
|---|---|---|---|---|
Yersinia pestis (4653728) | Yersinia pseudotuberculosis (4744671) | 11 | 4 | 275% |
Francisella tularensis (1892819) | Francisella philomiragia (2049711) | 22 | 5 | 440% |
Burkholderia mallei (5835527) | Burkholderia thailandensis (6723972) | 21 | 7 | 300% |
Brucella melitensis (3294931) | Agrobacterium tumefaciens (2074782) | 55 | 21 | 261% |