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Table 4 The numbers of good, bad and total probes (including gray) obtained for different specificity thresholds

From: A high-throughput pipeline for designing microarray-based pathogen diagnostic assays

Thresholds for specificity criteria

F. tularensis

Y. pestis

 

Good

Bad

Total

Good

Bad

Total

Identity = 80%, M 0 - M 3 = 18–22–26–30

748

46

2028

215

44

836

Identity = 80%, M 0 - M 3 = 19–22–25–28

820

63

2451

260

67

1042

Identity = 82.5%, M 0 - M 3 = 19–22–25–28

1142

113

3532

359

111

1587

Identity = 75%

195

22

473

94

42

305

Identity = 77.5%

788

88

2019

232

112

833

Identity = 80%

2143

379

7199

583

368

2608

T = 8

1656

265

4810

442

291

1895

T = 9

621

58

1496

193

93

614

T = 10

156

12

310

60

24

153

M 0 = 16

483

193

1580

96

187

628

M 0 = 17

1127

545

4254

208

534

1521

M 0 = 18

2632

1230

10665

491

1581

4040

M 1 = 20

418

119

1654

118

87

610

M 1 = 21

1857

523

7174

431

506

2581

M 1 = 22

3579

1226

14973

3758

1106

4952

M 2 = 23

486

90

1722

157

91

802

M 2 = 24

1646

383

6628

432

366

2567

M 2 = 25

3293

962

13967

771

751

4714

M 3 = 25

86

11

393

36

17

219

M 3 = 26

691

151

2866

223

160

1314

M 3 = 27

2026

533

8504

534

480

3305