Figure 5

SAM plotsheet outputs. SAM plotsheet outputs under the four sets of criteria: a) Δ = 0.68, fc = 1; b) Δ = 0.68, fc = 2; c) Δ = 0.68, fc = 3; d) Δ = 0, fc = 3, which are indicated at the upper right corner of each plotsheet. The red, green, and black dots represent upregulated, downregulated, and insignificant proteins respectively. The upper and lower 45° degree lines indicate the Δ threshold boundaries. Proteins with Δ = 0 would fall on the 45° line through the origin. The number of significant proteins, median number of false positives, and false discovery rate are indicated at the upper left corner of each plotsheet.