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Table 1 Log likelihood of the best haplotypes found by SimWalk2, EA1 and EA2 with simulated data

From: Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci

 

Complete genotypic data

no. evaluations‡:

20000

100000

500000

16000000*

SimWalk2

-1960.81

-1827.53

-1804.93

-1801.7 (32 minutes)¶

EA1

-2197.17

-1852.43

-1802.16

-1800.55 (9 minutes)

EA2

-2299.78

-1848.51

-1802.39

-1800.55 (10 minutes)

 

Incomplete genotypic data

no. evaluations‡:

40000

400000

4000000

16000000

SimWalk2

-943.83

-791.41

-769.97

-767.43 (12 minutes)

EA1

-1108.24

-791.18

-766.74

-764.66 (6 minutes)

EA2

-1112.86

-782.19

-765.59

-764.43 (7 minutes)

  1. ‡number of evaluations of the likelihood function, *16000000 is from the default annealing schedule of SimWalk2
  2. ¶Computing time for SimWalk2, EA1 and EA2 (EA-population size N = 10 with 4 CPUs)
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