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Table 4 Updating segregation indicators for a meiosis at a marker subsequently, and the change of allele assignment to the founder gamete given the updated segregation indicators

From: Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci

I. Log likelihood = -43.837

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

Marker 1

1

1

0

1

0

1

1

0

1

0

Marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

Marker 1

-

a

-

a

-

c

-

-

a

-

Marker 2

-

y

x

-

-

-

-

y

x

-

II. Log likelihood = -41.531

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

0

1

0

1

1

0

1

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

-

c

-

-

a

-

marker 2

-

y

x

-

-

-

-

y

x

-

III. Log likelihood = -39.225

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

1

0

1

1

0

1

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

-

c

-

-

a

-

marker 2

-

y

x

-

-

-

-

y

x

-

IV. Log likelihood = -36.919

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

0

0

1

1

0

1

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

c

-

-

-

a

-

marker 2

-

y

x

-

-

-

-

y

x

-

V. Log likelihood = -34.614

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

0

1

1

1

0

1

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

c

-

-

-

a

-

marker 2

-

y

x

-

-

-

-

y

x

-

VI. Log likelihood = -32.308

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

0

1

0

1

0

1

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

c

-

-

-

a

-

marker 2

-

y

x

-

-

-

-

y

x

-

VII. State is illegal

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

0

1

0

0

0

1

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a and c

a

-

-

-

-

-

a or c

-

marker 2

-

y

x

-

-

-

-

y

x

-