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Table 6 Joint updates

From: Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci

With joint update for m1 and m7 (log likelihood = -32.308)

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

Marker 1

0

0

1

0

1

0

0

0

1

0

Marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

a

c

a

-

-

-

-

-

a

-

marker 2

-

y

x

-

-

-

-

y

x

-

With joint update for m7 and m9 (log likelihood = -27.185)

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

0

1

0

0

0

0

0

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

-

-

-

c

c

-

marker 2

-

y

x

-

-

-

-

y

x

-

With joint update for m7 and m10 (log likelihood = -31.797)

 

m1

m2

m3

m4

m5

m6

m7

m8

m9

m10

marker 1

1

0

1

0

1

0

0

0

1

1

marker 2

1

0

1

0

1

0

0

0

0

0

 

f1

f2

f3

f4

f5

f6

f7

f8

f9

f10

marker 1

-

a

a

-

-

-

-

-

c

-

marker 2

-

y

x

-

-

-

-

y

x

-