Table 3 Characterization of Graphs
From: Improving protein function prediction methods with integrated literature data
| Â | Source | Yeast | Worm | Fly |
|---|---|---|---|---|
Number of Edges (Nodes) in Full Graph | PPI | 12177 (4581) | 2619 (1955) | 20056 (6689) |
| Â | GENETIC | 4429 (1304) | 20543 (2934) | 6523 (2734) |
| Â | COLIT | 8621 (2605) | 21847 (1665) | 17508 (2228) |
Number of Edges (Nodes) in Largest Connected Component | PPI | 12001 (4463) | 2451 (1685) | 19992 (6573) |
| Â | GENETIC | 4427 (1301) | 20359 (2736) | 6418 (2551) |
| Â | COLIT | 8390 (2291) | 12018 (921) | 17324 (2022) |
Median (Maximum) Number of Neighbors | PPI | 3 (288) | 1 (145) | 3 (173) |
| Â | GENETIC | 2 (153) | 6 (150) | 2 (191) |
| Â | COLIT | 4 (88) | 16 (243) | 8 (278) |
% Edges Intersect GENETIC | PPI | 0.09 | 0.9 | 0.2 |
| Â | COLIT | 1 | 21 | 6 |
% Edges Intersect PPI | GENETIC | 0.2 | 0.1 | 0.6 |
| Â | COLIT | 7 | 0.07 | 0.7 |
% Edges Only From SOURCE in PPI+SOURCE | GENETIC | 27 | 89 | 24 |
| Â | COLIT | 40 | 90 | 46 |