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Table 5 Encoding of nucleic acids by numeric values.

From: Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data

Nucleic acid

A

C

G

T

U

R

Y

M

Numeric code

0.05

0.1

0.15

0.2

0.25

0.3

0.35

0.4

Nucleic acid

K

W

S

B

D

H

V

N

Numeric code

0.45

0.5

0.55

0.6

0.65

0.7

0.75

0.8

  1. To incorporate the binding site sequence information into the NM inference, we encode the nucleic acid sequence by numerical values according to the nominal transitions in the table.
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BMC Bioinformatics

ISSN: 1471-2105

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