|  | SPS | |||||
---|---|---|---|---|---|---|---|
Method | Time | N = 2 | N = 3 | N = 5 | N = 7 | N = 10 | N = 15 |
ClustalW (iterative) | 52 minutes | 0.796 | 0.810 | 0.828 | 0.837 | 0.850 | 0.853 |
ProbConsRNA | 33 minutes | 0.836 | 0.855 | 0.879 | 0.890 | 0.899 | 0.907 |
G-INS-i | 8.8 minutes | 0.837 | 0.851 | 0.874 | 0.890 | 0.901 | 0.913 |
LaRA 1.31 | 5.5 days | 0.798 | 0.830 | 0.864 | 0.883 | 0.898 | 0.913 |
Murlet | 2.5 weeks | 0.843 | 0.863 | 0.886 | 0.897 | 0.906 | 0.915 |
MXSCARNA 2 | 4.2 hours | 0.850 | 0.866 | 0.884 | 0.894 | 0.907 | 0.914 |
RNA Sampler (fast) | 8.2 days | 0.787 | 0.801 | 0.824 | 0.828 | 0.841 | 0.855 |
RNAsampler | 2.9 weeks | 0.785 | 0.812 | 0.839 | 0.850 | 0.858 | 0.869 |
X-INS-i-larapair | 5.4 days | 0.837 | 0.869 | 0.896 | 0.909 | 0.919 | 0.930 |
X-INS-i-scarnapair | 18 hours | 0.856 | 0.876 | 0.902 | 0.913 | 0.922 | 0.931 |
# of alignments | Â | 8,976 | 4,835 | 2,405 | 1,426 | 845 | 503 |
(used for Wilcoxon test) | Â | (8,976) | (4,832) | (2,399) | (1,420) | (836) | (491) |