Table 2 Binning summary for Low Complexity datasets for contigs larger than 8 kb.
From: Binning sequences using very sparse labels within a metagenome
Assembler | Method | Bins | Binned Contigs | Total #Contigs | %of BinContigs | #ofPred NotInAct | wSp | wSn |
|---|---|---|---|---|---|---|---|---|
Arachne | kmer (7 mer) | 0 | 0 | 202 | 0 | 85 | - | 0.000 |
Arachne | kmer (8 mer) | 0 | 0 | 202 | 0 | 149 | - | 0.000 |
Arachne | BLAST distr 1 | 0 | 0 | 202 | 0 | 0 | - | 0.000 |
Arachne | BLAST distr 2 | 0 | 0 | 202 | 0 | 0 | - | 0.000 |
Arachne | S-GSOM (CP = 55%) | 1 | 141 | 202 | 69.8 | 0 | 1.000 | 0.698 |
Arachne | gen PhyloPythia (p:0.85) | 1 | 168 | 202 | 83.17 | 0 | 1.000 | 0.832 |
Arachne | ssp PhyloPythia (p:0.85) | 1 | 186 | 202 | 92.08 | 0 | 1.000 | 0.921 |
Arachne | S-GSOM (CP = 75%) | 1 | 180 | 202 | 89.11 | 0 | 1.000 | 0.891 |
Arachne | gen PhyloPythia (p:0.5) | 1 | 201 | 202 | 99.5 | 0 | 1.000 | 0.995 |
Arachne | ssp PhyloPythia (p:0.5) | 1 | 201 | 202 | 99.5 | 0 | 1.000 | 0.995 |
Phrap | kmer (7 mer) | 0 | 0 | 229 | 0 | 129 | - | 0.000 |
Phrap | kmer (8 mer) | 0 | 0 | 229 | 0 | 154 | - | 0.000 |
Phrap | BLAST distr 1 | 0 | 0 | 229 | 0 | 0 | - | 0.000 |
Phrap | BLAST distr 2 | 0 | 0 | 229 | 0 | 0 | - | 0.000 |
Phrap | S-GSOM (CP = 55%) | 1 | 157 | 229 | 68.56 | 0 | 1.000 | 0.686 |
Phrap | gen PhyloPythia (p:0.85) | 1 | 185 | 229 | 80.79 | 0 | 1.000 | 0.808 |
Phrap | ssp PhyloPythia (p:0.85) | 1 | 205 | 229 | 89.52 | 0 | 1.000 | 0.895 |
Phrap | S-GSOM (CP = 75%) | 1 | 204 | 229 | 89.08 | 0 | 1.000 | 0.891 |
Phrap | gen PhyloPythia (p:0.5) | 1 | 227 | 229 | 99.13 | 0 | 1.000 | 0.991 |
Phrap | ssp PhyloPythia (p:0.5) | 1 | 227 | 229 | 99.13 | 0 | 1.000 | 0.991 |