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Table 3 Binning summary for Medium Complexity datasets for contigs larger than 8 kb.

From: Binning sequences using very sparse labels within a metagenome

Assembler

Method

Bins

Binned Contigs

Total #Contigs

%of BinContigs

#ofPred NotInAct

wSp

wSn

Arachne

kmer (7 mer)

0

0

301

0

47

-

0.000

Arachne

kmer (8 mer)

0

0

301

0

191

-

0.000

Arachne

BLAST distr 1

0

0

301

0

0

-

0.000

Arachne

BLAST distr 2

0

0

301

0

0

-

0.000

Arachne

S-GSOM (CP = 55%)

2

220

301

73.09

0

1.000

0.731

Arachne

gen PhyloPythia (p:0.85)

2

242

301

80.4

0

1.000

0.804

Arachne

ssp PhyloPythia (p:0.85)

2

242

301

80.4

0

1.000

0.804

Arachne

S-GSOM (CP = 75%)

2

279

301

92.69

0

1.000

0.927

Arachne

gen PhyloPythia (p:0.5)

2

301

301

100

0

1.000

1.000

Arachne

ssp PhyloPythia (p:0.5)

2

301

301

100

0

1.000

1.000

Phrap

kmer (7 mer)

0

0

401

0

84

-

0.000

Phrap

kmer (8 mer)

0

0

401

0

271

-

0.000

Phrap

BLAST distr 1

0

0

401

0

0

-

0.000

Phrap

BLAST distr 2

0

0

401

0

0

-

0.000

Phrap

S-GSOM (CP = 55%)

2

318

401

79.3

0

1.000

0.793

Phrap

gen PhyloPythia (p:0.85)

2

301

401

75.06

0

1.000

0.751

Phrap

ssp PhyloPythia (p:0.85)

2

295

401

73.57

0

1.000

0.736

Phrap

S-GSOM (CP = 75%)

2

367

401

91.52

0

1.000

0.915

Phrap

gen PhyloPythia (p:0.5)

2

399

401

99.5

1

1.000

0.995

Phrap

ssp PhyloPythia (p:0.5)

2

399

401

99.5

1

1.000

0.995