From: Binning sequences using very sparse labels within a metagenome
Assembler | Method | Bins | Binned Contigs | Total #Contigs | %of BinContigs | #ofPred NotInAct | wSp | wSn |
---|---|---|---|---|---|---|---|---|
Arachne | kmer (7 mer) | 0 | 0 | 301 | 0 | 47 | - | 0.000 |
Arachne | kmer (8 mer) | 0 | 0 | 301 | 0 | 191 | - | 0.000 |
Arachne | BLAST distr 1 | 0 | 0 | 301 | 0 | 0 | - | 0.000 |
Arachne | BLAST distr 2 | 0 | 0 | 301 | 0 | 0 | - | 0.000 |
Arachne | S-GSOM (CP = 55%) | 2 | 220 | 301 | 73.09 | 0 | 1.000 | 0.731 |
Arachne | gen PhyloPythia (p:0.85) | 2 | 242 | 301 | 80.4 | 0 | 1.000 | 0.804 |
Arachne | ssp PhyloPythia (p:0.85) | 2 | 242 | 301 | 80.4 | 0 | 1.000 | 0.804 |
Arachne | S-GSOM (CP = 75%) | 2 | 279 | 301 | 92.69 | 0 | 1.000 | 0.927 |
Arachne | gen PhyloPythia (p:0.5) | 2 | 301 | 301 | 100 | 0 | 1.000 | 1.000 |
Arachne | ssp PhyloPythia (p:0.5) | 2 | 301 | 301 | 100 | 0 | 1.000 | 1.000 |
Phrap | kmer (7 mer) | 0 | 0 | 401 | 0 | 84 | - | 0.000 |
Phrap | kmer (8 mer) | 0 | 0 | 401 | 0 | 271 | - | 0.000 |
Phrap | BLAST distr 1 | 0 | 0 | 401 | 0 | 0 | - | 0.000 |
Phrap | BLAST distr 2 | 0 | 0 | 401 | 0 | 0 | - | 0.000 |
Phrap | S-GSOM (CP = 55%) | 2 | 318 | 401 | 79.3 | 0 | 1.000 | 0.793 |
Phrap | gen PhyloPythia (p:0.85) | 2 | 301 | 401 | 75.06 | 0 | 1.000 | 0.751 |
Phrap | ssp PhyloPythia (p:0.85) | 2 | 295 | 401 | 73.57 | 0 | 1.000 | 0.736 |
Phrap | S-GSOM (CP = 75%) | 2 | 367 | 401 | 91.52 | 0 | 1.000 | 0.915 |
Phrap | gen PhyloPythia (p:0.5) | 2 | 399 | 401 | 99.5 | 1 | 1.000 | 0.995 |
Phrap | ssp PhyloPythia (p:0.5) | 2 | 399 | 401 | 99.5 | 1 | 1.000 | 0.995 |