From: Binning sequences using very sparse labels within a metagenome
Assembler | Method | Bins | Binned Contigs | Total #Contigs | %of BinContigs | #ofPred NotInAct | wSp | wSn |
---|---|---|---|---|---|---|---|---|
Arachne | kmer (7 mer) | 0 | 0 | 367 | 0 | 168 | - | 0.000 |
Arachne | kmer (8 mer) | 0 | 0 | 367 | 0 | 312 | - | 0.000 |
Arachne | BLAST distr 1 | 0 | 0 | 367 | 0 | 0 | - | 0.000 |
Arachne | BLAST distr 2 | 0 | 0 | 367 | 0 | 0 | - | 0.000 |
Arachne | S-GSOM (CP = 55%) | 3 | 295 | 367 | 80.38 | 0 | 1.000 | 0.798 |
Arachne | gen PhyloPythia (p:0.85) | 2 | 214 | 367 | 58.31 | 0 | 1.000 | 0.583 |
Arachne | ssp PhyloPythia (p:0.85) | 2 | 236 | 367 | 64.31 | 0 | 1.000 | 0.638 |
Arachne | S-GSOM (CP = 75%) | 3 | 343 | 367 | 93.46 | 0 | 0.950 | 0.926 |
Arachne | gen PhyloPythia (p:0.5) | 2 | 292 | 367 | 79.56 | 0 | 1.000 | 0.796 |
Arachne | ssp PhyloPythia (p:0.5) | 2 | 296 | 367 | 80.65 | 0 | 1.000 | 0.798 |
Phrap | kmer (7 mer) | 2 | 3 | 482 | 0.62 | 159 | 1.000 | 0.000 |
Phrap | kmer (8 mer) | 3 | 17 | 482 | 3.53 | 281 | 1.000 | 0.000 |
Phrap | BLAST distr 1 | 0 | 0 | 482 | 0 | 0 | - | 0.000 |
Phrap | BLAST distr 2 | 0 | 0 | 482 | 0 | 1 | - | 0.000 |
Phrap | S-GSOM (CP = 55%) | 8 | 381 | 482 | 79.05 | 9 | 1.000 | 0.728 |
Phrap | gen PhyloPythia (p:0.85) | 3 | 236 | 482 | 48.96 | 0 | 1.000 | 0.488 |
Phrap | ssp PhyloPythia (p:0.85) | 3 | 272 | 482 | 56.43 | 0 | 1.000 | 0.560 |
Phrap | S-GSOM (CP = 75%) | 8 | 443 | 482 | 91.91 | 9 | 1.000 | 0.840 |
Phrap | gen PhyloPythia (p:0.5) | 4 | 368 | 482 | 76.35 | 1 | 1.000 | 0.759 |
Phrap | ssp PhyloPythia (p:0.5) | 5 | 387 | 482 | 80.29 | 1 | 1.000 | 0.797 |