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Table 4 Binning summary for Low Complexity datasets for contigs with at least 10 reads.

From: Binning sequences using very sparse labels within a metagenome

Assembler

Method

Bins

Binned Contigs

Total #Contigs

%of BinContigs

#ofPred NotInAct

wSp

wSn

Arachne

kmer (7 mer)

0

0

367

0

168

-

0.000

Arachne

kmer (8 mer)

0

0

367

0

312

-

0.000

Arachne

BLAST distr 1

0

0

367

0

0

-

0.000

Arachne

BLAST distr 2

0

0

367

0

0

-

0.000

Arachne

S-GSOM (CP = 55%)

3

295

367

80.38

0

1.000

0.798

Arachne

gen PhyloPythia (p:0.85)

2

214

367

58.31

0

1.000

0.583

Arachne

ssp PhyloPythia (p:0.85)

2

236

367

64.31

0

1.000

0.638

Arachne

S-GSOM (CP = 75%)

3

343

367

93.46

0

0.950

0.926

Arachne

gen PhyloPythia (p:0.5)

2

292

367

79.56

0

1.000

0.796

Arachne

ssp PhyloPythia (p:0.5)

2

296

367

80.65

0

1.000

0.798

Phrap

kmer (7 mer)

2

3

482

0.62

159

1.000

0.000

Phrap

kmer (8 mer)

3

17

482

3.53

281

1.000

0.000

Phrap

BLAST distr 1

0

0

482

0

0

-

0.000

Phrap

BLAST distr 2

0

0

482

0

1

-

0.000

Phrap

S-GSOM (CP = 55%)

8

381

482

79.05

9

1.000

0.728

Phrap

gen PhyloPythia (p:0.85)

3

236

482

48.96

0

1.000

0.488

Phrap

ssp PhyloPythia (p:0.85)

3

272

482

56.43

0

1.000

0.560

Phrap

S-GSOM (CP = 75%)

8

443

482

91.91

9

1.000

0.840

Phrap

gen PhyloPythia (p:0.5)

4

368

482

76.35

1

1.000

0.759

Phrap

ssp PhyloPythia (p:0.5)

5

387

482

80.29

1

1.000

0.797