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Table 5 Comparisons of accuracies obtained by PFRES, PFP and coupled PFRES+SCPRED and PFP+SCPRED methods on FC699 dataset.

From: SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences

Entire FC699 dataset

Only kept sequences

Only removed sequences

 

PFRES

SCPRED

PFRES + SCPRED

Coverage (% kept)

fold

class

class

fold

class

fold

class

 

65.6

92.1

87.5

68.6

96.7

45.7

62.8

86.6%

PFP

SCPRED

PFP + SCPRED

Coverage (% kept)

fold

class

class

fold

class

fold

class

 

30.9

65.8

87.5

47.3

97.0

3.8

14.1

62.4%

  1. The "Entire FC699 dataset" column shows accuracies for PFRES, SCPRED and PFP methods for class/fold prediction on the FC699 dataset. The "Only kept sequences" column show accuracies obtained by the PFRES and PFP methods for sequences for which SCPRED predicted the same structural class as PFRES and PFP, respectively. The "Only removed sequences" column show accuracies obtained by the PFRES and PFP methods for sequences for which SCPRED predicted different structural class when compared with predictions of PFRES and PFP, respectively. The "Coverage" column shows the percentage of sequences for which the SCPRED and PFRES/PFP predicted the same structural class.
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BMC Bioinformatics

ISSN: 1471-2105

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