Inferring the role of transcription factors in regulatory networks

BMC Bioinformatics

Table 2 List of genome expression experiments on S. cerevisiae used in the sign inference process

Experiment Identifier	Description	Ref.
E1	Diauxic Shift	[40]
E2	Sporulation	[41]
E3	Expression analysis of Snf2 mutant	[42]
E4	Expression analysis of Swi1 mutant	[42]
E5	Pho metabolism	[43]
E6	Nitrogen Depletion	[44]
E7	Stationary Phase	[44]
E8	Heat Shock from 21°C to 37°C	[44]
E9	Heat Shock from 17°C to 37°C	[44]
E10	Wild type response to DNA-damaging agents	[45]
E11	Mec1 mutant response to DNA-damaging agents	[45]
E12	Glycosylation defects on gene expression	[46]
E13	Cells grown to early log-phase in YPE (Rich medium with 2% of Ethanol)	[47]
E14	Cells grown to early log-phase in YPG (Rich medium with 2% of Glycerol)	[47]
E15	Titratable promoter alleles – Ero1 mutant	[48]

All experiments contain information on steady state shift and their curated data is available in SGD (Saccharomyces Genome Database) [32].

ISSN: 1471-2105