Table 1 Exemplary runs and data. Example runs of the exemplified CPSP-tools application scenarios. The corresponding sequences and structures are given in Table 2. The neutral net N is given in Figure 3.
From: CPSP-tools – Exact and complete algorithms for high-throughput 3D lattice protein studies
Appl. | Tool | Parameter | Result | Runtime |
|---|---|---|---|---|
1 | HPDEG | S 0 | 471354 | 2.5 s |
1 | HPDEG | S 1 | 1 | 0.2 s |
2 | HPSTRUCT | S 0 | X0, E = -13 | 0.01 s |
2 | HPSTRUCT | S 1 | X1, E = -22 | 0.06 s |
3 | HPNNET | X1, S1, deg = 1 | S1 .. S4 | 9 s |
4 | HPDESIGN | X1, minH = 17, so = 2 | S1 .. S12 | 13 m 43 s |
4 | HPNNET | X1, S1 .. S12, deg = 1 | N, S1 .. S14 | 1 m |