From: Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes
N° | Genome | Length, bp | Number of genes | Upstream region | Downstream region |
---|---|---|---|---|---|
1 | Deinococcus radiodurans R1 (AE000513) | 2648638 | 2681 | 5 | 1 |
2 | Caulobacter crescentus (AE005673) | 4016947 | 3787 | 2 | 0 |
3 | Ralstonia solanacearum GMI1000 (AL646052) | 3716413 | 3477 | 7 | 0 |
4 | Pseudomonas aeruginosa PA01 (AE004091) | 6264403 | 5570 | 15 | 2 |
5 | Xanthomonas campestris pv. campestris (AE008922) | 5076188 | 4197 | 2 | 0 |
6 | Mycobacterium tuberculosis (AL123456) | 4411529 | 3922 | 7 | 0 |
7 | Xanthomonas axonopodis pv. citri 306 (AE008923) | 5175554 | 4344 | 2 | 0 |
8 | Mesorhizobium loti (NC 002678) | 7036074 | 6693 | 9 | 0 |
9 | Sinorhizobium meliloti 1021 (AL591688) | 3654135 | 3375 | 8 | 0 |
10 | Mycobacterium leprae TN (AL450380) | 3268203 | 2770 | 8 | 1 |
11 | Agrobacterium tumefaciens C58 (AE007869) | 2841581 | 2701 | 20 | 1 |
12 | Brucella melitensis 16 M chromosome I (AE008917) | 2117144 | 2059 | 21 | 4 |
13 | Treponema pallidum (AE000520) | 1138011 | 1083 | 4 | 3 |
14 | Chlorobium tepidum TLS (AE006470) | 2154946 | 2329 | 35 | 13 |
15 | Salmonella typhimurium LT2 (AE006468) | 4857432 | 4608 | 163 | 61 |
16 | Neisseria meningitidis serogroup B MC58 (AE002098) | 2272351 | 2226 | 112 | 45 |
17 | Escherichia coli O157:H7 (AE005174) | 5528445 | 5478 | 263 | 79 |
18 | Methanobacterium thermoautotrophicum delta H (AE000666) | 1751377 | 1900 | 81 | 24 |
19 | Synechocystis PCC6803 (AB001339) | 3573470 | 1074 | 31 | 6 |
20 | Thermotoga maritima (AE000512) | 1860725 | 1926 | 63 | 10 |
21 | Vibrio cholerae chromosome I (AE003852) | 2961149 | 2887 | 93 | 37 |
22 | Yersinia pestis CO92 (AL590842) | 4653728 | 4042 | 274 | 61 |
23 | Aquifex aeolicus (AE000657) | 1551335 | 1503 | 71 | 37 |
24 | Bacillus halodurans C-125 (BA000004) | 4202353 | 4125 | 359 | 87 |
25 | Bacillus subtilis (AL009126) | 4214814 | 4182 | 430 | 111 |
26 | Mycoplasma pneumoniae M129 (U00089) | 816394 | 705 | 37 | 14 |
27 | Chlamydia muridarum (AE002160) | 1069411 | 954 | 86 | 31 |
28 | Pasteurella multocida PM70 (AE004439) | 2257487 | 1996 | 228 | 64 |
29 | Chlamydophila pneumoniae J138 (BA000008) | 1226565 | 1097 | 162 | 51 |
30 | Streptococcus pneumoniae (AE005672) | 2160837 | 2306 | 365 | 156 |
31 | Streptococcus pyogenes SF370 serotype M1 (AE004092) | 1852441 | 1731 | 292 | 115 |
32 | Thermoanaerobacter tengcongensis MB4T (AE008691) | 2689445 | 2632 | 467 | 248 |
33 | Listeria innocua Clip11262 (AL592022) | 3011208 | 3529 | 426 | 229 |
34 | Haemophilus influenzae Rd (L42023) | 1830138 | 1775 | 277 | 94 |
35 | Mycoplasma genitalium G37 (L43967) | 580074 | 519 | 83 | 63 |
36 | Staphylococcus aureus N315 (BA000018) | 2814816 | 2638 | 930 | 418 |
37 | Campylobacter jejuni (AL111168) | 1641481 | 1684 | 540 | 353 |
38 | Clostridium acetobutylicum (AE001473) | 3940880 | 3738 | 1685 | 916 |
39 | Borrelia burgdorferi (AE000783) | 910724 | 875 | 350 | 292 |
40 | Rickettsia prowazekii Madrid E (AJ235269) | 1111523 | 885 | 443 | 252 |
41 | Clostridium perfringens 13 (BA000016) | 3031430 | 2779 | 1499 | 772 |
42 | Ureaplasma urealyticum (AF222894) | 751719 | 645 | 328 | 236 |
43 | Buchnera aphidicola Sg (AE013218) | 641454 | 584 | 339 | 225 |