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Table 2 Number of sequences reminiscent of strong promoters in regions located upstream and downstream of the initiation codon of genes in bacterial genomes.

From: Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes

N°

Genome

Length, bp

Number of genes

Upstream region

Downstream region

1

Deinococcus radiodurans R1 (AE000513)

2648638

2681

5

1

2

Caulobacter crescentus (AE005673)

4016947

3787

2

0

3

Ralstonia solanacearum GMI1000 (AL646052)

3716413

3477

7

0

4

Pseudomonas aeruginosa PA01 (AE004091)

6264403

5570

15

2

5

Xanthomonas campestris pv. campestris (AE008922)

5076188

4197

2

0

6

Mycobacterium tuberculosis (AL123456)

4411529

3922

7

0

7

Xanthomonas axonopodis pv. citri 306 (AE008923)

5175554

4344

2

0

8

Mesorhizobium loti (NC 002678)

7036074

6693

9

0

9

Sinorhizobium meliloti 1021 (AL591688)

3654135

3375

8

0

10

Mycobacterium leprae TN (AL450380)

3268203

2770

8

1

11

Agrobacterium tumefaciens C58 (AE007869)

2841581

2701

20

1

12

Brucella melitensis 16 M chromosome I (AE008917)

2117144

2059

21

4

13

Treponema pallidum (AE000520)

1138011

1083

4

3

14

Chlorobium tepidum TLS (AE006470)

2154946

2329

35

13

15

Salmonella typhimurium LT2 (AE006468)

4857432

4608

163

61

16

Neisseria meningitidis serogroup B MC58 (AE002098)

2272351

2226

112

45

17

Escherichia coli O157:H7 (AE005174)

5528445

5478

263

79

18

Methanobacterium thermoautotrophicum delta H (AE000666)

1751377

1900

81

24

19

Synechocystis PCC6803 (AB001339)

3573470

1074

31

6

20

Thermotoga maritima (AE000512)

1860725

1926

63

10

21

Vibrio cholerae chromosome I (AE003852)

2961149

2887

93

37

22

Yersinia pestis CO92 (AL590842)

4653728

4042

274

61

23

Aquifex aeolicus (AE000657)

1551335

1503

71

37

24

Bacillus halodurans C-125 (BA000004)

4202353

4125

359

87

25

Bacillus subtilis (AL009126)

4214814

4182

430

111

26

Mycoplasma pneumoniae M129 (U00089)

816394

705

37

14

27

Chlamydia muridarum (AE002160)

1069411

954

86

31

28

Pasteurella multocida PM70 (AE004439)

2257487

1996

228

64

29

Chlamydophila pneumoniae J138 (BA000008)

1226565

1097

162

51

30

Streptococcus pneumoniae (AE005672)

2160837

2306

365

156

31

Streptococcus pyogenes SF370 serotype M1 (AE004092)

1852441

1731

292

115

32

Thermoanaerobacter tengcongensis MB4T (AE008691)

2689445

2632

467

248

33

Listeria innocua Clip11262 (AL592022)

3011208

3529

426

229

34

Haemophilus influenzae Rd (L42023)

1830138

1775

277

94

35

Mycoplasma genitalium G37 (L43967)

580074

519

83

63

36

Staphylococcus aureus N315 (BA000018)

2814816

2638

930

418

37

Campylobacter jejuni (AL111168)

1641481

1684

540

353

38

Clostridium acetobutylicum (AE001473)

3940880

3738

1685

916

39

Borrelia burgdorferi (AE000783)

910724

875

350

292

40

Rickettsia prowazekii Madrid E (AJ235269)

1111523

885

443

252

41

Clostridium perfringens 13 (BA000016)

3031430

2779

1499

772

42

Ureaplasma urealyticum (AF222894)

751719

645

328

236

43

Buchnera aphidicola Sg (AE013218)

641454

584

339

225