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Table 2 Number of sequences reminiscent of strong promoters in regions located upstream and downstream of the initiation codon of genes in bacterial genomes.

From: Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes

Genome Length, bp Number of genes Upstream region Downstream region
1 Deinococcus radiodurans R1 (AE000513) 2648638 2681 5 1
2 Caulobacter crescentus (AE005673) 4016947 3787 2 0
3 Ralstonia solanacearum GMI1000 (AL646052) 3716413 3477 7 0
4 Pseudomonas aeruginosa PA01 (AE004091) 6264403 5570 15 2
5 Xanthomonas campestris pv. campestris (AE008922) 5076188 4197 2 0
6 Mycobacterium tuberculosis (AL123456) 4411529 3922 7 0
7 Xanthomonas axonopodis pv. citri 306 (AE008923) 5175554 4344 2 0
8 Mesorhizobium loti (NC 002678) 7036074 6693 9 0
9 Sinorhizobium meliloti 1021 (AL591688) 3654135 3375 8 0
10 Mycobacterium leprae TN (AL450380) 3268203 2770 8 1
11 Agrobacterium tumefaciens C58 (AE007869) 2841581 2701 20 1
12 Brucella melitensis 16 M chromosome I (AE008917) 2117144 2059 21 4
13 Treponema pallidum (AE000520) 1138011 1083 4 3
14 Chlorobium tepidum TLS (AE006470) 2154946 2329 35 13
15 Salmonella typhimurium LT2 (AE006468) 4857432 4608 163 61
16 Neisseria meningitidis serogroup B MC58 (AE002098) 2272351 2226 112 45
17 Escherichia coli O157:H7 (AE005174) 5528445 5478 263 79
18 Methanobacterium thermoautotrophicum delta H (AE000666) 1751377 1900 81 24
19 Synechocystis PCC6803 (AB001339) 3573470 1074 31 6
20 Thermotoga maritima (AE000512) 1860725 1926 63 10
21 Vibrio cholerae chromosome I (AE003852) 2961149 2887 93 37
22 Yersinia pestis CO92 (AL590842) 4653728 4042 274 61
23 Aquifex aeolicus (AE000657) 1551335 1503 71 37
24 Bacillus halodurans C-125 (BA000004) 4202353 4125 359 87
25 Bacillus subtilis (AL009126) 4214814 4182 430 111
26 Mycoplasma pneumoniae M129 (U00089) 816394 705 37 14
27 Chlamydia muridarum (AE002160) 1069411 954 86 31
28 Pasteurella multocida PM70 (AE004439) 2257487 1996 228 64
29 Chlamydophila pneumoniae J138 (BA000008) 1226565 1097 162 51
30 Streptococcus pneumoniae (AE005672) 2160837 2306 365 156
31 Streptococcus pyogenes SF370 serotype M1 (AE004092) 1852441 1731 292 115
32 Thermoanaerobacter tengcongensis MB4T (AE008691) 2689445 2632 467 248
33 Listeria innocua Clip11262 (AL592022) 3011208 3529 426 229
34 Haemophilus influenzae Rd (L42023) 1830138 1775 277 94
35 Mycoplasma genitalium G37 (L43967) 580074 519 83 63
36 Staphylococcus aureus N315 (BA000018) 2814816 2638 930 418
37 Campylobacter jejuni (AL111168) 1641481 1684 540 353
38 Clostridium acetobutylicum (AE001473) 3940880 3738 1685 916
39 Borrelia burgdorferi (AE000783) 910724 875 350 292
40 Rickettsia prowazekii Madrid E (AJ235269) 1111523 885 443 252
41 Clostridium perfringens 13 (BA000016) 3031430 2779 1499 772
42 Ureaplasma urealyticum (AF222894) 751719 645 328 236
43 Buchnera aphidicola Sg (AE013218) 641454 584 339 225