Table 3 Strong promoter candidates identified in T. maritima MSB8*.

TM_0013

conserved hypothetical protein

Operon: 2 genes

ACAATTTTTATCTGATATTTTTTTCACAttcaccatagtcgatTATAAC

<--- 97 bp --->aatctggaggtgacaatATG

0,8475

TM_0110

transcriptional regulator, XylR-related

Operon: 6 genes

ACCTTGATTTTAAATTATTTCCTGCATataattaatgtgaaCATAAT

<--- 10 bp --->aaaaggaggaatcgaagTTG

0,805

TM_0280

hypothetical protein

Operon: 6 genes

GCAATATTTGTCCAGAAATATACTTGATTtaacaaaaatggacaatgTAGAAT

<--- 37 bp --->aaggaggaatatcgtttATG

0,88

TM_0339

hypothetical protein

Operon: 3 genes

AGAAAAATTTTTTTGGAGACTTGACAaaatatttggtaatattcTAAAAT

<--- 5 bp --->gcaggaggtgacaaaatATG

0,8975

TM_0373

dnaK protein

Operon: 2 genes

TTTTACAAATTCTCATACGACCCCTTGACAtcccattctgtgcctcacTATAAT

<--- 21 bp --->tctaaggaggtgacacaATG

0,94

TM_0657

rubrerythrin

Operon: 3 genes

TAATGTAACTATTCAAAATCATTACAgtttataattatgtggTAAAAT

<--- 22 bp --->atagggaggtgcagggtATG

0,8125

TM_0682

hypothetical protein

Operon: 3 genes

GAATACTCTGTCAGAAAGATTCGTGATCAtcttttcacctcgtgtagTATAAT

<--- 7 bp --->gagtattcttctacacaATG

0,915

TM_1016

hypothetical protein

TAAAAATTTCATGAAAAATTTCTTGAATtctgtgaccaaaagggTTTAAT

<--- 5 bp --->gccggaggtgatgtgagATG

0,9175

TM_1167

hypothetical protein

GAAAAGTTACAGAAAAAGTACCCTTGTTAtctgaaggtgaaaaatggTAAAAT

<--- 61 bp --->tacagggagggcgggagATG

0,865

TM_t27

tRNA-Asn

TCATTCATTTTACCATCGAGTCCACTTGAAAttcaggaaggtatgtagTACAAT

<--- 0 bp --->tatccgtggaggttcc

0,8675

TM_1205

conserved hypothetical protein

Operon: 13 genes

GTTTTTTATCTCTACTAATTAGGTTGACAttattgattcagaagagTAAAAT

<--- 40 bp --->ccgaggaggtgtgatgaGTG

0,88

TM_1318

Operon: 2 genes

AGAAACAATTTTGGAATTTGATCCATGGACAttattacctttaatgGATAAT

<--- 0 bp --->tttaacggaggATG

0,8325

TM_t34

tRNA-Leu

AGAAAAATTTCCGATGAGGGTACTTGAAAagggtgaaaacctgtgcTATTAT

<--- 0 bp --->atatgtcggagttgcc

0,855

TM_1429

glycerol uptake facilitator protein

Operon: 3 genes

GCATTGTGATTTTTGTAACTATATTGACAtaaaacaaaaggtttgtTATAAT

<--- 107 bp --->caaggaggattgggaaaATG

0,9175

TM_t39

tRNA-Ala

Operon: 3 genes

AAAAATAAAAAGTCCTTCTGGGGATTGACCatatttcgtactcatgcTATAAT

<--- 50 bp --->taatataaagacgaggtggg

0,8725

TM_1667

xylose isomerase

Operon: 2 genes

AAGTATATCCTAAAAAAATATTTGAAAtgataccccaagattttaTATAAT

<--- 16 bp --->tttagggaggtgtttacATG

0,905

TM_1780

argininosuccinate synthase

Operon: 6 genes

GAAAATAACAGTGAAAAAACACTTCATAtaaatcatttcaaataatccTATAAT

<--- 15 bp --->aaagaggagggttcatcATG

0,875

TM_0150 (complem.)

ribosomal protein L32

Operon: 5 genes

AAAAATGTAAAAGAAGAGAAACTTGAATctttgaaaaacatcaTATACT

<--- 210 bp --->acgaggaggtataaaagATG

0,855

TM_0477 (complem.)

outer membrane protein alpha

ACAAAAAAACTTTAGAAAACTCTTGAATttcctttggacgggatggTATAAT

<--- 28 bp --->gaagggaggtttgtcccATG

0,9425

TM_0625 (complem.)

hypothetical protein

ATATTCGTTCTGAATGAAGGTTTTACATttcatccaaattattttggtTATAGT

<--- 152 bp --->attggaggcaaatagaaATG

0,805

TM_0656 (complem.)

conserved hypothetical protein

Operon: 2 genes

AACTTAAGTAACACAAAATTAACCTTGACAacgaaaggggggtgggTATAAT

<--- 42 bp --->aaggggttgggaactttGTG

0,8925

TM_0755 (complem.)

conserved hypothetical protein

Operon: 2 genes

AGAAATTCTTTGAAAACTATCTAGAATtcaaacgtcgcttttccagTATACT

<--- 101 bp --->aatggaggtgtctctgtATG

0,85

TM_0971 (complem.)

hypothetical protein

AAATATAAATCTGAATTTACTAAATTCACAtttagcaaatcatcattTATAAT

<--- 10 bp --->aggaatctcaagggggaATG

0,895

TM_1015 (complem.)

glutamate dehydrogenase

ATAATTTTTGCAATTTTATCTCTATACAtctcacatcacctccggctaTATATT

<--- 104 bp --->ttcgaggggggaaatgtATG

0,855

TM_1067 (complem.)

oligopeptide ABC transporter, periplasmic

GGATTATTTTATACTGAAAGCCCTTGACCttgttgtatgtttgttgaTATTAT

<--- 45 bp --->ataacgcagggggtggtATG

0,92

TM_1271 (complem.)

type IV pilin-related protein

GGGTGATATTTCAACATTAAAATCTTGACAttctaccatgtcaaggtgTATAAT

<--- 35 bp --->cccgggaggtggattttATG

0,9525

TM_1286 (complem.)

5-methyltetrahydropteroyltriglutamate...

GTTTATGCAAATTTTCCTTCTGTTAACCAtgttacacacaacatgtggTATCAT

<--- 19 bp --->aatggaggtgaaaagggTTG

0,8625

TM_t31 (complem.)

tRNA-Leu

AAGTTTTGATTTTTGTAAGGTTGAAAtaatctttctgacgatgtggTATAAT

<--- 0 bp --->aaaaaaaggagcc

0,86

TM_1412 (complem.)

hypothetical protein

ATATGGAAGTTCAAAAAACATCTTGCTTtcagagtgtgtttgtggTATAAA

<--- 24 bp --->aataattccttagaggtATG

0,865

TM_1419 (complem.)

myo-inositol-1-phosphate synthase-...

Operon: 3 genes

AGAAAACTATTGGTAAAGCACTTGAAAtatatgactgtaaaaacgtgaTATAAT

<--- 61 bp --->ctaaggaggtgaaacatATG

0,87

TM_1439 (complem.)

hypothetical protein

Operon: 3 genes

TAGTATTCTACCCTAAACTCTTTCAttctggattcgataatTGTAAT

<--- 222 bp --->tgagagtgaaaaaggccATG

0,835

TM_t45 (complem.)

tRNA-Ser

AAAAGAAGGAAGAAAAATGAAAACTTGAACaaggaaacgattgagtgTATAAT

<--- 1 bp --->tttttctggtgtggagagga

0,865

TM_1786 (complem.)

hypothetical protein

GTATTATTCATTCTAAAAACTTGAAActgaccaaataaagtatTAGAAT

<--- 44 bp --->cacaagggggtgttttcATG

0,855

TM_1850 (complem.)

hypothetical protein

AAACGATTCTTCTAAAATGTGTTCTTGATTtgtatcactgttatgtTATAAA

<--- 43 bp --->aaaaaggaggtgaaactATG

0,855

TM_t11

tRNA-Thr

Operon: 2 genes

GAAAAGGGTTATCAGGAAATATCTTGAATagaaaaggttcgtgtgtTAAAAT

<--- 0 bp --->aaccacagaggcgagca

0,8825

TM_1272

glutamyl tRNA-Gln amidotransferase...

Operon: 3 genes

TTTCACATTTTGCATTATACACCTTGACAtggtagaatgtcaagatTTTAAT

<--- 99 bp --->ataatccacgagaggagGTG

0,8975

TM_0032 (complem.)

transcriptional regulator, XylR-related

Operon: 1 genes

AATATTAGAATTTGAACTATAATTCGAAAtaattcctgttattcactCATAAT

<--- 79 bp --->agcaggaggaatatggaGTG

0,86

TM_1490 (complem.)

ribosomal protein L14

Operon: 22 genes

GGTGAAAATATGCCCAGGAAACGTTTGACTggaatagttgtgagcgaTAAAAT

<--- 259 bp --->aagggaggggttgaatcATG

0,845