Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

Table 3 Parameter settings for Sanger and 454 tests

	Minimum Hit Length	Minimum Hit Identity	Maximume-value	Required Length of MCS	Required MCS Coverage Depth	Minimum Number of Hits for Extension
Sanger	150	89	1.00E-25	150	3	2
454	30	88	1.00E-10	30	3	2
	Required Coverage Length	Maximum Extend Length	Minimum BL2SEQ Hit Size	Maximum BL2SEQ e-value	Maximum Number of Times a Sequence Can Be Used in One Direction	Other
Sanger	150	50	90	1.00E-10	13
454	30	40	15	10	4	BL2SEQ Word Size: 7

ISSN: 1471-2105