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Table 3 Parameter settings for Sanger and 454 tests

From: Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

  Minimum Hit Length Minimum Hit Identity Maximume-value Required Length of MCS Required MCS Coverage Depth Minimum Number of Hits for Extension
Sanger 150 89 1.00E-25 150 3 2
454 30 88 1.00E-10 30 3 2
  Required Coverage Length Maximum Extend Length Minimum BL2SEQ Hit Size Maximum BL2SEQ e-value Maximum Number of Times a Sequence Can Be Used in One Direction Other
Sanger 150 50 90 1.00E-10 13  
454 30 40 15 10 4 BL2SEQ Word Size: 7