Skip to main content

Advertisement

Table 2 Hit statistics of matrices.

From: A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins

Matrix %ID # hits PPV (%) FDR (%)
BLOSUM62 62 4619 60.45 39.55
BLOSUM62Adj 62 2729 92.56 7.44
CBM/09-2-1 62 1981 91.92 8.08
CBM/10-2-1 62 2198 93.54 6.46
CBM/11-2-1 62 2406 91.44 8.56
CBM/11-2-1 70 2392 92.52 7.48
CCF53 62 2452 93.11 6.89
CCF53 70 2452 92.37 7.63
  1. %ID = percentage clustering of selected blocks; PPV = TP/(TP+FP) positive predictive value; FDR = FP/FP+TP false discovery rate.