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Table 2 Hit statistics of matrices.

From: A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins

Matrix

%ID

# hits

PPV (%)

FDR (%)

BLOSUM62

62

4619

60.45

39.55

BLOSUM62Adj

62

2729

92.56

7.44

CBM/09-2-1

62

1981

91.92

8.08

CBM/10-2-1

62

2198

93.54

6.46

CBM/11-2-1

62

2406

91.44

8.56

CBM/11-2-1

70

2392

92.52

7.48

CCF53

62

2452

93.11

6.89

CCF53

70

2452

92.37

7.63

  1. %ID = percentage clustering of selected blocks; PPV = TP/(TP+FP) positive predictive value; FDR = FP/FP+TP false discovery rate.