Table 1 Feature comparison of integrative analysis platforms
From: MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
MD-SeeGH | VAMP/CAPweb | ISACGH | CGH Analytics | CGHPRO | CGH Explorer | Blue Fuse | ArrayCyGHt | M-CGH | SeeGHv1.6 | |
|---|---|---|---|---|---|---|---|---|---|---|
Segmentation | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ||
Normalization | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |||
ISCN Reporting | ✓ | ✓ | ||||||||
Integrative Analysis with Expression data | ✓ | ✓ | ✓ | ✓ | ✓ | |||||
Multiple Sample Visualization | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ||||
Gene Tracks | ✓ | ✓ | ✓ | ✓ | ✓ | |||||
Other Tracks (ie.miRNA, CNV, CpG island, etc.) | ✓ | ✓ | ||||||||
Links to external websites (ie. NCBI, UCSC, etc.) | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ||||
Mapping files (different Genomic Builds) | ✓ | ✓ | ✓ | |||||||
Integration of third party analysis tools | ✓ | ✓ | ✓ | ✓ | ||||||
Frequency Plot | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ||||
Heatmap | ✓ | ✓ | ✓ | ✓ | ||||||
Group analysis | ✓ | ✓ | ✓ | |||||||
Free public access | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | |||
Data storage (samples only loaded once) | ✓ | ✓ | ✓ | |||||||
Web based software | ✓ | ✓ | ✓ | |||||||
References | [6, 20] | [21] | [8] | [1] | [3] | [7] | [22] | [5] | [2] |