TY - JOUR AU - Brem, R. B. AU - Yvert, G. AU - Clinton, R. AU - Kruglyak, L. PY - 2002 DA - 2002// TI - Genetic dissection of transcriptional regulation in budding yeast JO - Science VL - 296 UR - https://doi.org/10.1126/science.1069516 DO - 10.1126/science.1069516 ID - Brem2002 ER - TY - JOUR AU - Cheung, V. G. AU - Conlin, L. K. AU - Weber, T. M. AU - Arcaro, M. AU - Jen, K. Y. AU - Morley, M. AU - Spielman, R. S. PY - 2003 DA - 2003// TI - Natural variation in human gene expression assessed in lymphoblastoid cells JO - Nature Genet VL - 33 UR - https://doi.org/10.1038/ng1094 DO - 10.1038/ng1094 ID - Cheung2003 ER - TY - JOUR AU - Schadt, E. E. AU - Monks, S. A. AU - Drake, T. A. AU - Lusis, A. J. AU - Che, N. AU - Colinayo, V. AU - Ruff, T. G. AU - Milligan, S. B. AU - Lamb, J. R. AU - Cavet, G. AU - Linsley, P. S. AU - Mao, M. AU - Stoughton, R. B. AU - Friend, S. H. PY - 2003 DA - 2003// TI - Genetics of gene expression surveyed in maize, mouse and man JO - Nature VL - 422 UR - https://doi.org/10.1038/nature01434 DO - 10.1038/nature01434 ID - Schadt2003 ER - TY - JOUR AU - Monks, S. A. AU - Leonardson, A. AU - Zhu, H. AU - Cundiff, P. AU - Pietrusiak, P. AU - Edwards, S. AU - Phillips, J. W. AU - Sachs, A. AU - Schadt, E. E. PY - 2004 DA - 2004// TI - Genetic inheritance of gene expression in human cell lines JO - Am J Hum Genet VL - 75 UR - https://doi.org/10.1086/426461 DO - 10.1086/426461 ID - Monks2004 ER - TY - JOUR AU - Morley, M. AU - Molony, C. M. AU - Weber, T. M. AU - Devlin, J. L. AU - Ewens, K. G. AU - Spielman, R. S. AU - Cheung, V. G. PY - 2004 DA - 2004// TI - Genetic analysis of genome-wide variation in human gene expression JO - Nature VL - 430 UR - https://doi.org/10.1038/nature02797 DO - 10.1038/nature02797 ID - Morley2004 ER - TY - JOUR AU - Bing, N. AU - Hoeschele, I. PY - 2005 DA - 2005// TI - Genetical Genomics Analysis of a Yeast Segregant Population for Transcription Network Inference JO - Genetics VL - 170 UR - https://doi.org/10.1534/genetics.105.041103 DO - 10.1534/genetics.105.041103 ID - Bing2005 ER - TY - JOUR AU - Jansen, R. C. AU - Nap, J. P. PY - 2001 DA - 2001// TI - Genetical genomics: the added value from segregation JO - Trends Genet VL - 17 UR - https://doi.org/10.1016/S0168-9525(01)02310-1 DO - 10.1016/S0168-9525(01)02310-1 ID - Jansen2001 ER - TY - JOUR AU - Yvert, G. AU - Brem, R. B. AU - Whittle, J. AU - Akey, J. M. AU - Foss, E. AU - Smith, E. N. AU - Mackelprang, R. AU - Kruglyak, L. PY - 2003 DA - 2003// TI - Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors JO - Nature Genet VL - 35 UR - https://doi.org/10.1038/ng1222 DO - 10.1038/ng1222 ID - Yvert2003 ER - TY - BOOK AU - Golub, G. H. AU - Van Loan, C. F. PY - 1996 DA - 1996// TI - Matrix Computation PB - Johns Hopkins Univ. Press CY - Baltimore ID - Golub1996 ER - TY - JOUR AU - Alter, O. AU - Brown, P. O. AU - Botstein, D. PY - 2000 DA - 2000// TI - Singular value decomposition for genome-wide expression data processing and modeling JO - Proc Natl Acad Sci VL - 97 UR - https://doi.org/10.1073/pnas.97.18.10101 DO - 10.1073/pnas.97.18.10101 ID - Alter2000 ER - TY - JOUR AU - Hyvarinen, A. AU - Oja, E. PY - 2000 DA - 2000// TI - Independent Component Analysis: Algorithms and Applications JO - Neural Networks VL - 13 UR - https://doi.org/10.1016/S0893-6080(00)00026-5 DO - 10.1016/S0893-6080(00)00026-5 ID - Hyvarinen2000 ER - TY - CHAP AU - Baek, K. AU - Draper, B. AU - Beveridge, J. AU - She, K. PY - 2002 DA - 2002// TI - PCA vs ICA: A comparison on the FERET data set BT - Joint Conference on Information Sciences ID - Baek2002 ER - TY - JOUR AU - Bartlett, M. S. AU - Movellan, J. R. AU - Sejnowski, T. J. PY - 2002 DA - 2002// TI - Face recognition by independent component analysis JO - IEEE Trans. on Neural Networks VL - 13 UR - https://doi.org/10.1109/TNN.2002.804287 DO - 10.1109/TNN.2002.804287 ID - Bartlett2002 ER - TY - CHAP AU - Hastie, T. AU - Tibshirani, R. AU - Friedman, J. PY - 2001 DA - 2001// TI - Unsupervised Learning BT - The Elements of Statistical Learning PB - Springer-Verlag CY - New York UR - https://doi.org/10.1007/978-0-387-21606-5 DO - 10.1007/978-0-387-21606-5 ID - Hastie2001 ER - TY - JOUR AU - Teschendorff, A. E. AU - Journee, M. AU - Absil, P. AU - Sepulchre, R. AU - Caldas, C. PY - 2007 DA - 2007// TI - Elucidating the altered transcriptional programs in breast cancer using independent component analysis JO - PLoS Computational Biology VL - 3 UR - https://doi.org/10.1371/journal.pcbi.0030161 DO - 10.1371/journal.pcbi.0030161 ID - Teschendorff2007 ER - TY - JOUR AU - Yeung, K. Y. AU - Ruzzo, W. L. PY - 2001 DA - 2001// TI - Principal component analysis for clustering gene expression data JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.9.763 DO - 10.1093/bioinformatics/17.9.763 ID - Yeung2001 ER - TY - JOUR AU - Misra, J. AU - Schmitt, W. AU - Hwang, D. AU - Hsiao, L. AU - Gullans, S. AU - Stephanopoulos, G. AU - Stephanopoulos, G. PY - 2002 DA - 2002// TI - Interactive Exploration of Microarray Gene Expression Patterns in a Reduced Dimensional Space JO - Genome Research VL - 12 UR - https://doi.org/10.1101/gr.225302 DO - 10.1101/gr.225302 ID - Misra2002 ER - TY - JOUR AU - Lee, S. AU - Batzoglou, S. PY - 2003 DA - 2003// TI - Application of independent component analysis to microarrays JO - Genome Biology VL - 4 UR - https://doi.org/10.1186/gb-2003-4-11-r76 DO - 10.1186/gb-2003-4-11-r76 ID - Lee2003 ER - TY - JOUR AU - Frigyesi, A. AU - Veerla, S. AU - Lindgren, D. AU - Hoglund, M. PY - 2006 DA - 2006// TI - Independent component analysis reveals new and biologically significant structures in micro array data JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-290 DO - 10.1186/1471-2105-7-290 ID - Frigyesi2006 ER - TY - JOUR AU - Alter, O. AU - Brown, P. O. AU - Botstein, D. PY - 2003 DA - 2003// TI - Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms JO - Proc Natl Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.0530258100 DO - 10.1073/pnas.0530258100 ID - Alter2003 ER - TY - CHAP AU - Raychaudhuri, S. AU - Stuart, J. M. AU - Altman, R. B. PY - 2000 DA - 2000// TI - Principal components analysis to summarize microarray experiments: application to sporulation time series BT - Pacific Symposium on Biocomputing ID - Raychaudhuri2000 ER - TY - JOUR AU - Carter, G. W. AU - Rupp, S. AU - Fink, G. R. AU - Galitski, T. PY - 2006 DA - 2006// TI - Disentangling information flow in the Ras-cAMP signaling network JO - Genome Res VL - 16 UR - https://doi.org/10.1101/gr.4473506 DO - 10.1101/gr.4473506 ID - Carter2006 ER - TY - JOUR AU - Nielsen, T. O. AU - West, R. B. AU - Linn, S. C. AU - Alter, O. AU - Knowling, M. A. AU - O'Connell, J. X. AU - Zhu, S. AU - Fero, M. AU - Sherlock, G. AU - Pollack, J. R. AU - Brown, P. O. AU - Botstein, D. AU - Rijn, M. V. a. n. D. e. PY - 2002 DA - 2002// TI - Molecular characterisation of soft tissue tumours: a gene expression study JO - Lancet VL - 359 UR - https://doi.org/10.1016/S0140-6736(02)08270-3 DO - 10.1016/S0140-6736(02)08270-3 ID - Nielsen2002 ER - TY - JOUR AU - Shen, R. AU - Ghosh, D. AU - Chinnaiyan, A. AU - Meng, Z. PY - 2006 DA - 2006// TI - Eigengene based linear discriminant model for tumor classification using gene expression microarray data JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl442 DO - 10.1093/bioinformatics/btl442 ID - Shen2006 ER - TY - JOUR AU - Zhang, X. W. AU - Yap, Y. L. AU - Wei, D. AU - Chen, F. AU - Danchin, A. PY - 2005 DA - 2005// TI - Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis JO - Eur J Hum Genet VL - 13 UR - https://doi.org/10.1038/sj.ejhg.5201495 DO - 10.1038/sj.ejhg.5201495 ID - Zhang2005 ER - TY - JOUR AU - Chiappetta, P. AU - Roubaud, M. C. AU - Torresani, R. PY - 2004 DA - 2004// TI - Blind Source Separation and the Analysis of Microarray Data JO - Journal of Computational Biology VL - 11 UR - https://doi.org/10.1089/cmb.2004.11.1090 DO - 10.1089/cmb.2004.11.1090 ID - Chiappetta2004 ER - TY - JOUR AU - Lan, H. AU - Stoehr, J. P. AU - Nadler, S. T. AU - Schueler, K. L. AU - Yandell, B. S. AU - Attie, A. D. PY - 2003 DA - 2003// TI - Dimension Reduction for Mapping mRNA Abundance as Quantitative Traits JO - Genetics VL - 164 ID - Lan2003 ER - TY - JOUR AU - Bensen, J. T. AU - Lange, L. A. AU - Langefeld, C. D. AU - Chang, B. L. AU - Bleecker, E. R. AU - Meyers, D. A. AU - Xu, J. PY - 2003 DA - 2003// TI - Exploring pleiotropy using principal components JO - BMC Genet VL - 4 UR - https://doi.org/10.1186/1471-2156-4-S1-S53 DO - 10.1186/1471-2156-4-S1-S53 ID - Bensen2003 ER - TY - JOUR AU - Gilbert, H. AU - Le Roy, P. PY - 2003 DA - 2003// TI - Comparison of three multitrait methods for QTL detection JO - Genet Sel Evol VL - 35 UR - https://doi.org/10.1186/1297-9686-35-3-281 DO - 10.1186/1297-9686-35-3-281 ID - Gilbert2003 ER - TY - JOUR AU - Ghazalpour, A. AU - Doss, S. AU - Sheth, S. S. AU - Ingram-Drake, L. A. AU - Schadt, E. E. AU - Lusis, A. J. AU - Drake, T. A. PY - 2005 DA - 2005// TI - Genomic analysis of metabolic pathway gene expression in mice JO - Genome Biol VL - 6 UR - https://doi.org/10.1186/gb-2005-6-7-r59 DO - 10.1186/gb-2005-6-7-r59 ID - Ghazalpour2005 ER - TY - JOUR AU - Brem, R. B. AU - Kruglyak, L. PY - 2005 DA - 2005// TI - The landscape of genetic complexity across 5,700 gene expression JO - Proc Natl Acad Sci VL - 102 UR - https://doi.org/10.1073/pnas.0408709102 DO - 10.1073/pnas.0408709102 ID - Brem2005 ER - TY - BOOK AU - Lynch, M. AU - Walsh, B. PY - 1998 DA - 1998// TI - Genetics and Analysis of Quantitative Traits PB - Sinauer Associates CY - Sunderland, MA ID - Lynch1998 ER - TY - JOUR AU - Storey, J. D. AU - Tibshirani, R. PY - 2003 DA - 2003// TI - Statistical significance for genomewide studies JO - Proc Natl Acad Sci VL - 100 UR - https://doi.org/10.1073/pnas.1530509100 DO - 10.1073/pnas.1530509100 ID - Storey2003 ER - TY - JOUR AU - Liebermeister, W. PY - 2002 DA - 2002// TI - Linear modes of gene expression determined by independent component analysis JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.1.51 DO - 10.1093/bioinformatics/18.1.51 ID - Liebermeister2002 ER - TY - JOUR AU - Berriz, G. F. AU - King, O. D. AU - Bryant, B. AU - Sander, C. AU - Roth, F. P. PY - 2003 DA - 2003// TI - Characterizing gene sets with FuncAssociate JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg363 DO - 10.1093/bioinformatics/btg363 ID - Berriz2003 ER - TY - JOUR AU - Churchill, G. A. AU - Doerge, R. W. PY - 1994 DA - 1994// TI - Empirical threshold values for quantitative trait mapping JO - Genetics VL - 138 ID - Churchill1994 ER - TY - STD TI - Fungal Genome Initiative[http://www.broad.mit.edu/annotation/fgi/] UR - http://www.broad.mit.edu/annotation/fgi/ ID - ref37 ER - TY - JOUR AU - Dunn, B. AU - Levine, R. P. AU - Sherlock, G. PY - 2005 DA - 2005// TI - Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures JO - BMC Genomics VL - 6 UR - https://doi.org/10.1186/1471-2164-6-53 DO - 10.1186/1471-2164-6-53 ID - Dunn2005 ER - TY - JOUR AU - Kerr, M. K. AU - Martin, M. AU - Churchill, G. A. PY - 2000 DA - 2000// TI - Analysis of variance for gene expression microarray data JO - J Comput Biol VL - 7 UR - https://doi.org/10.1089/10665270050514954 DO - 10.1089/10665270050514954 ID - Kerr2000 ER - TY - JOUR AU - Horn, J. L. PY - 1965 DA - 1965// TI - A rationale and test for the number of factors in factor analysis JO - Psychometrika VL - 30 UR - https://doi.org/10.1007/BF02289447 DO - 10.1007/BF02289447 ID - Horn1965 ER - TY - BOOK PY - 2006 DA - 2006// TI - R: A Language and Environment for Statistical Computing PB - R Foundation for Statistical Computing CY - Vienna, Austria ID - ref41 ER - TY - BOOK AU - Marchini, J. AU - Heaton, C. PY - 2006 DA - 2006// TI - fastICA: FastICA algorithms to perform ICA and Projection Pursuit ID - Marchini2006 ER - TY - STD TI - Teschendorff A: MLICA: Independent Component Analysis using Maximum Likelihood. [R package version 0.6]. ID - ref43 ER - TY - BOOK AU - Broman, K. W. AU - Wu, H. PY - 2006 DA - 2006// TI - QTL: Tools for analyzing QTL experiments ID - Broman2006 ER -