TY - JOUR AU - Smith, T. F. AU - Waterman, M. S. PY - 1981 DA - 1981// TI - Identification of common molecular subsequences JO - J Mol Biol VL - 147 UR - https://doi.org/10.1016/0022-2836(81)90087-5 DO - 10.1016/0022-2836(81)90087-5 ID - Smith1981 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Krogh, A. AU - Brown, M. AU - Mian, I. S. AU - Sjolander, K. AU - Haussler, D. PY - 1994 DA - 1994// TI - Hidden Markov models in computational biology. Applications to protein modeling JO - J Mol Biol VL - 235 UR - https://doi.org/10.1006/jmbi.1994.1104 DO - 10.1006/jmbi.1994.1104 ID - Krogh1994 ER - TY - JOUR AU - Park, J. AU - Karplus, K. AU - Barrett, C. AU - Hughey, R. AU - Haussler, D. AU - Hubbard, T. AU - Chothia, C. PY - 1998 DA - 1998// TI - Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods JO - J Mol Biol VL - 284 UR - https://doi.org/10.1006/jmbi.1998.2221 DO - 10.1006/jmbi.1998.2221 ID - Park1998 ER - TY - CHAP AU - Jaakkola, T. AU - Diekhans, M. AU - Haussler, D. PY - 1999 DA - 1999// TI - Using the Fisher kernel method to detect remote protein homologies BT - Proc Int Conf Intell Syst Mol Biol ID - Jaakkola1999 ER - TY - JOUR AU - Liao, L. AU - Noble, W. S. PY - 2003 DA - 2003// TI - Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships JO - J Comput Biol VL - 10 UR - https://doi.org/10.1089/106652703322756113 DO - 10.1089/106652703322756113 ID - Liao2003 ER - TY - JOUR AU - Ben-Hur, A. AU - Brutlag, D. PY - 2003 DA - 2003// TI - Remote homology detection: a motif based approach JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg1002 DO - 10.1093/bioinformatics/btg1002 ID - Ben-Hur2003 ER - TY - JOUR AU - Leslie, C. S. AU - Eskin, E. AU - Cohen, A. AU - Weston, J. AU - Noble, W. S. PY - 2004 DA - 2004// TI - Mismatch string kernels for discriminative protein classification JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg431 DO - 10.1093/bioinformatics/btg431 ID - Leslie2004 ER - TY - CHAP AU - Leslie, C. AU - Eskin, E. AU - Noble, W. S. PY - 2002 DA - 2002// TI - The spectrum kernel: a string kernel for SVM protein classification BT - Pac Symp Biocomput ID - Leslie2002 ER - TY - JOUR AU - Saigo, H. AU - Vert, J. P. AU - Ueda, N. AU - Akutsu, T. PY - 2004 DA - 2004// TI - Protein homology detection using string alignment kernels JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth141 DO - 10.1093/bioinformatics/bth141 ID - Saigo2004 ER - TY - JOUR AU - Kuang, R. AU - Ie, E. AU - Wang, K. AU - Wang, K. AU - Siddiqi, M. AU - Freund, Y. AU - Leslie, C. PY - 2005 DA - 2005// TI - Profile-based string kernels for remote homology detection and motif extraction JO - J Bioinform Comput Biol VL - 3 UR - https://doi.org/10.1142/S021972000500120X DO - 10.1142/S021972000500120X ID - Kuang2005 ER - TY - JOUR AU - Rangwala, H. AU - Karypis, G. PY - 2005 DA - 2005// TI - Profile-based direct kernels for remote homology detection and fold recognition JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti687 DO - 10.1093/bioinformatics/bti687 ID - Rangwala2005 ER - TY - JOUR AU - Dong, Q. W. AU - Wang, X. L. AU - Lin, L. PY - 2006 DA - 2006// TI - Application of latent semantic analysis to protein remote homology detection JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/bti801 DO - 10.1093/bioinformatics/bti801 ID - Dong2006 ER - TY - JOUR AU - Lingner, T. AU - Meinicke, P. PY - 2006 DA - 2006// TI - Remote homology detection based on oligomer distances JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl376 DO - 10.1093/bioinformatics/btl376 ID - Lingner2006 ER - TY - JOUR AU - Leslie, C. AU - Kuang, R. PY - 2004 DA - 2004// TI - Fast String Kernels using Inexact Matching for Protein Sequences JO - J Mach Learn Res VL - 5 ID - Leslie2004 ER - TY - JOUR AU - Murzin, A. G. AU - Brenner, S. E. AU - Hubbard, T. AU - Chothia, C. PY - 1995 DA - 1995// TI - SCOP: a structural classification of proteins database for the investigation of sequences and structures JO - J Mol Biol VL - 247 ID - Murzin1995 ER - TY - STD TI - gobics.de: Thomas Lingner[http://www.gobics.de/thomas/] UR - http://www.gobics.de/thomas/ ID - ref17 ER - TY - JOUR AU - Chapelle, O. PY - 2007 DA - 2007// TI - Training a Support Vector Machine in the Primal JO - Neural Comp VL - 19 UR - https://doi.org/10.1162/neco.2007.19.5.1155 DO - 10.1162/neco.2007.19.5.1155 ID - Chapelle2007 ER - TY - JOUR AU - Cohen, G. AU - Hilario, M. AU - Sax, H. AU - Hugonnet, S. AU - Geissbuhler, A. PY - 2006 DA - 2006// TI - Learning from imbalanced data in surveillance of nosocomial infection JO - Artif Intell Med VL - 37 UR - https://doi.org/10.1016/j.artmed.2005.03.002 DO - 10.1016/j.artmed.2005.03.002 ID - Cohen2006 ER - TY - JOUR AU - Finn, R. AU - Mistry, J. AU - Schuster-Böckler, B. AU - Griffiths-Jones, S. AU - Hollich, V. AU - Lassmann, T. AU - Moxon, S. AU - Marshall, M. AU - Khanna, A. AU - Durbin, R. AU - Eddy, S. AU - Sonnhammer, E. AU - Bateman, A. PY - 2006 DA - 2006// TI - Pfam: clans, web tools and services JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj149 DO - 10.1093/nar/gkj149 ID - Finn2006 ER - TY - JOUR PY - 2008 DA - 2008// TI - The universal protein resource (UniProt) JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm895 DO - 10.1093/nar/gkm895 ID - ref21 ER - TY - STD TI - PFAM: Family: Omega-toxin (PF06357)[http://pfam.janelia.org/family/alignment/download/html?acc=PF06357&alnType=full&viewer=html] UR - http://pfam.janelia.org/family/alignment/download/html?acc=PF06357&alnType=full&viewer=html ID - ref22 ER -