Word correlation matrices for protein sequence analysis and remote homology detection

BMC Bioinformatics

Table 2 Ordered list of discriminative words for experiment 1.

#	Score	Word	Count
1	7.066	CCSGSC	3
2	6.930	CCSRKC	2
3	6.419	CRSGKC	4
4	5.451	CCRSCN	2
5	5.354	GRSGKC	1
6	5.215	CSRKCN	2
7	5.142	GRGSRC	1
8	4.979	CSGRGS	1
9	4.812	CCTGSC	4
10	4.789	SYNCCR	2

List of 10 most discriminative words for positive training sequences of experiment 1 according to SCOP superfamily 7.3.5 using word length K = 6. Words are sorted according to their word score. The first and second column correspond to rank and score of a word, respectively. The third column contains the word as amino acid sequence in IUPAC one-letter code. In the fourth column, the number of occurrences of a particular word in the positive training sequences are shown.

ISSN: 1471-2105