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Table 1 Mapping of the first 10 probe sets on Affymetrix Mouse 430 2.0 to probes (also called targets) annotated with the same RefSeq IDs on Illumina Mouse-6v10. Gene symbols (GS) for Affymetrix and Illumina (column 3 and 6 respectively) are indicative and were not used to perform the mapping. In this example, we disregarded the version number of RefSeq identifiers (i.e. the suffix of RefSeq accession number) and considered accession number with the same prefix (i.e. NM_123456.1 and NM_123456.2 for instance) to be equivalent.

From: Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'

Affy probe set

RefSeq (Affy)

GS (Afffy)

Illumina target

RefSeq (Illumina)

GS (Illumina)

1415670_at

NM_017477, NM_201244

Copg

scl29780.26_164-S

NM_017477

Copg

1415671_at

NM_013477

Atp6v0d1

scl011972.1_247-S, scl000737.1_18-S, scl000708.1_100-S

NM_013477

Atp6v0d1

1415672_at

NM_020585

Golga7

scl057437.1_41-S

NM_020585

Golga7

1415673_at

NM_133900

Psph

scl25996.9.1_198-S

NM_133900

Psph

1415674_a_at

NM_021789

Trappc4

scl35956.2.1_28-S

NM_021789

Trappc4

1415675_at

NM_010073

Dpm2

scl013481.4_295-S

NM_010073

Dpm2

1415676_a_at

NM_011186

Psmb5

scl019173.2_9-S

NM_011186

Psmb5

1415677_at

NM_026819

Dhrs1

scl45528.8.1_39-S

NM_026819

Dhrs1

1415678_at

NM_008910

Ppm1a

scl0019042.1_40-S, scl019042.1_95-S

NM_008910

Ppm1a

1415679_at

NM_025498

Psenen

scl066340.3_30-S

NM_025498

1700023M09Rik