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Figure 1 | BMC Bioinformatics

Figure 1

From: Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

Figure 1

The Scipio workflow. This diagram depicts the data flow of a Scipio run. Scipio needs two FASTA files as input, one containing the protein query and one containing the genome sequence. Scipio starts BLAT and processes the BLAT results in a series of steps, successively refining and assembling the hits. Scipio's output is a YAML file, which can further be converted into a GFF file or a log file. YAML files can also be manually edited and read by a parser of which many exist for all modern programming languages. The resulting data structure can then be further processed.

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BMC Bioinformatics

ISSN: 1471-2105

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