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Table 1 Resulting classification for all methods

From: Inferring modules of functionally interacting proteins using the Bond Energy Algorithm

Code COGs PREDICTED BEA PREDICTED HIERARCHICAL PREDICTED K-MEANS PREDICTED PAM
Information storage and processing      
J 217 213 321 544 754
K 132 122 4 0 0
L 184 181 39 0 0
Cellular processes      
D 32 32 0 0 0
O 110 104 26 0 0
M 155 153 140 84 0
N 133 130 46 81 100
P 160 149 10 0 0
T 97 83 0 0 0
Metabolism      
C 224 220 65 24 0
G 171 164 17 197 62
E 233 226 584 260 312
F 85 83 18 0 0
H 154 141 49 0 0
I 75 72 0 0 0
Q 62 55 0 0 0
Poorly characterized      
R 449 431 113 250 0
S 750 748 1875 1867 2079
  1. Classification for COG Functional Categories (One classification for multiple classification COGs).