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Table 1 GO categories significantly (FDR < 0.10) enriched among genes belonging to SCC Clusters A and B.

From: Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient

GO id

Term

Genes

p value (ORA)

Cluster A

   

GO:0050658

RNA transport

5

0.0002

Cluster B

   

GO:0009615

response to virus

8

0.0001

GO:0008047

enzyme activator activity

5

0.0002

GO:0030312

external encapsulating structure

5

0.0002

GO:0017077

oxidative phosphorylation uncoupler activity

5

0.0002

GO:0008287

protein serine/threonine phosphatase complex

9

0.0003

GO:0015071

protein phosphatase type 2C activity

6

0.005

GO:0016311

dephosphorylation

11

0.001

GO:0042221

response to chemical stimulus

48

0.0011

GO:0005730

nucleolus

8

0.0022

GO:0042364

water-soluble vitamin biosynthesis

8

0.0022

GO:0009738

abscisic acid mediated signaling

8

0.0022

GO:0006810

transport

92

0.0022

GO:0005886

plasma membrane

25

0.0027

GO:0009755

hormone-mediated signaling

14

0.0035

  1. GO id: the Gene Ontology identifier for each over-represented Gene Ontology terms. Term: the name of the term. Genes: Number of genes on the array with the GO annotation term in column 1. P value: The unadjusted p value from the over-representation analysis (ORA) test.